Model-driven analysis of mutant fitness experiments improves genome-scale metabolic models of Zymomonas mobilis ZM4

Systems-Level Analysis of Oxygen Exposure in Zymomonas mobilis: Implications for Isoprenoid Production

(2019) Julia I. Martien et al.   mSystems

2H and 13C metabolic flux analysis elucidates in vivo thermodynamics of the ED pathway in Zymomonas mobilis

(2019) Tyler B. Jacobson et al.   METABOLIC ENGINEERING

Complete genome sequence and the expression pattern of plasmids of the model ethanologen Zymomonas mobilis ZM4 and its xylose-utilizing derivatives 8b and 2032

(2018) Shihui Yang et al.   Biotechnology for Biofuels

Advances and prospects in metabolic engineering of Zymomonas mobilis

(2018) Xia Wang et al.   METABOLIC ENGINEERING

Genome-Scale In Silico Analysis for Enhanced Production of Succinic Acid in Zymomonas mobilis

(2018) Hanifah Widiastuti et al.   Processes

Model-enabled gene search (MEGS) allows fast and direct discovery of enzymatic and transport gene functions in the marine bacteriumVibrio fischeri

(2017) Shu Pan et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Reconstruction of a charge balanced genome-scale metabolic model to study the energy-uncoupled growth of Zymomonas mobilis ZM1

(2016) E. Motamedian et al.   Molecular BioSystems

KEGG as a reference resource for gene and protein annotation

(2015) Minoru Kanehisa et al.   NUCLEIC ACIDS RESEARCH

BiGG Models: A platform for integrating, standardizing and sharing genome-scale models

(2015) Zachary A. King et al.   NUCLEIC ACIDS RESEARCH

N2gas is an effective fertilizer for bioethanol production byZymomonas mobilis

(2015) Timothy A. Kremer et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Towards an Informative Mutant Phenotype for Every Bacterial Gene

(2014) A. Deutschbauer et al.   JOURNAL OF BACTERIOLOGY

Biotechnological potential of respiring Zymomonas mobilis: A stoichiometric analysis of its central metabolism

(2013) Agris Pentjuss et al.   JOURNAL OF BIOTECHNOLOGY

The MetaCyc database of metabolic pathways and enzymes and the BioCyc collection of Pathway/Genome Databases

(2013) Ron Caspi et al.   NUCLEIC ACIDS RESEARCH

Translation rate is controlled by coupled trade-offs between site accessibility, selective RNA unfolding and sliding at upstream standby sites

(2013) Amin Espah Borujeni et al.   NUCLEIC ACIDS RESEARCH

Genome-scale modeling and in silico analysis of ethanologenic bacteria Zymomonas mobilis

(2010) Hanifah Widiastuti et al.   BIOTECHNOLOGY AND BIOENGINEERING

Systematic analysis of genome-wide fitness data in yeast reveals novel gene function and drug action

(2010) Maureen E Hillenmeyer et al.   GENOME BIOLOGY

Phenotype MicroArray Profiling of Zymomonas mobilis ZM4

(2009) Barry Bochner et al.   APPLIED BIOCHEMISTRY AND BIOTECHNOLOGY

Transcriptomic and metabolomic profiling of Zymomonas mobilis during aerobic and anaerobic fermentations

(2009) Shihui Yang et al.   BMC GENOMICS

Quantitative phenotyping via deep barcode sequencing

(2009) A. M. Smith et al.   GENOME RESEARCH

Improved genome annotation for Zymomonas mobilis

(2009) Shihui Yang et al.   NATURE BIOTECHNOLOGY

Enzymatic assembly of DNA molecules up to several hundred kilobases

(2009) Daniel G Gibson et al.   NATURE METHODS

Database resources of the National Center for Biotechnology Information

(2008) E. W. Sayers et al.   NUCLEIC ACIDS RESEARCH