Rumen and fecal microbial profiles in cattle fed high lignin diets using metagenome analysis

Carbohydrate binding modules enhance cellulose enzymatic hydrolysis by increasing access of cellulases to the substrate

(2019) A. Bernardes et al.   CARBOHYDRATE POLYMERS

Understanding the alteration in rumen microbiome and CAZymes profile with diet and host through comparative metagenomic approach

(2019) Varsha Bohra et al.   ARCHIVES OF MICROBIOLOGY

Microbiota composition, gene pool and its expression in Gir cattle ( Bos indicus ) rumen under different forage diets using metagenomic and metatranscriptomic approaches

(2018) Ramesh J. Pandit et al.   SYSTEMATIC AND APPLIED MICROBIOLOGY

Microbial diversity and community composition of caecal microbiota in commercial and indigenous Indian chickens determined using 16s rDNA amplicon sequencing

(2018) Ramesh J. Pandit et al.   Microbiome

Hydrolytic boosting of lignocellulosic biomass by a fungal lytic polysaccharide monooxygenase, AnLPMO15g from Aspergillus niger

(2018) Liping Du et al.   INDUSTRIAL CROPS AND PRODUCTS

Interspecies cross-feeding orchestrates carbon degradation in the rumen ecosystem

(2018) Lindsey M. Solden et al.   Nature Microbiology

In depth analysis of rumen microbial and carbohydrate-active enzymes profile in Indian crossbred cattle

(2017) V. Lyju Jose et al.   SYSTEMATIC AND APPLIED MICROBIOLOGY

Nutritional value of whole coconut, coconut powder, and coconut fiber treated with sodium hydroxide for sheep

(2016) José Cardoso de Araújo Neto et al.   CIENCIA E AGROTECNOLOGIA

Evaluation of 16S rRNA amplicon sequencing using two next-generation sequencing technologies for phylogenetic analysis of the rumen bacterial community in steers

(2016) Phillip R. Myer et al.   JOURNAL OF MICROBIOLOGICAL METHODS

STAMP: statistical analysis of taxonomic and functional profiles

(2014) Donovan H. Parks et al.   BIOINFORMATICS

Microbial and Carbohydrate Active Enzyme profile of buffalo rumen metagenome and their alteration in response to variation in the diet

(2014) Dishita D. Patel et al.   GENE

The SILVA and “All-species Living Tree Project (LTP)” taxonomic frameworks

(2013) Pelin Yilmaz et al.   NUCLEIC ACIDS RESEARCH

SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing

(2012) Anton Bankevich et al.   JOURNAL OF COMPUTATIONAL BIOLOGY

Quality control and preprocessing of metagenomic datasets

(2011) R. Schmieder et al.   BIOINFORMATICS

Metagenomic Discovery of Biomass-Degrading Genes and Genomes from Cow Rumen

(2011) M. Hess et al.   SCIENCE

Diversity and abundance of the bacterial 16S rRNA gene sequences in forestomach of alpacas (Lama pacos) and sheep (Ovis aries)

(2010) Cai-Xia Pei et al.   ANAEROBE

Comparative Genome Analysis of Prevotella ruminicola and Prevotella bryantii: Insights into Their Environmental Niche

(2010) Janaki Purushe et al.   MICROBIAL ECOLOGY

Adaptation to herbivory by the Tammar wallaby includes bacterial and glycoside hydrolase profiles different from other herbivores

(2010) P. B. Pope et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA