Short-term cellulose addition decreases microbial diversity and network complexity in an Ultisol following 32-year fertilization

Grazing intensity induced alternations of soil microbial community composition in aggregates drive soil organic carbon turnover in a desert steppe

(2021) Jianling Fan et al.   AGRICULTURE ECOSYSTEMS & ENVIRONMENT

Effects of warming on the bacterial community and its function in a temperate steppe

(2021) Yang Yu et al.   SCIENCE OF THE TOTAL ENVIRONMENT

DNA stable-isotope probing delineates carbon flows from rice residues into soil microbial communities depending on fertilization

(2020) Yali Kong et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Linking belowground microbial network changes to different tolerance level towards Verticillium wilt of olive

(2020) Antonio J. Fernández-González et al.   Microbiome

Multiple elements of soil biodiversity drive ecosystem functions across biomes

(2020) Manuel Delgado-Baquerizo et al.   Nature Ecology & Evolution

Soil bacterial taxonomic diversity is critical to maintaining the plant productivity

(2020) Qing-Lin Chen et al.   ENVIRONMENT INTERNATIONAL

Influence mechanisms of long-term fertilizations on the mineralization of organic matter in Ultisol

(2020) Peidong Xu et al.   SOIL & TILLAGE RESEARCH

Biodiversity of key-stone phylotypes determines crop production in a 4-decade fertilization experiment

(2020) Kunkun Fan et al.   ISME Journal

The results of biodiversity–ecosystem functioning experiments are realistic

(2020) Malte Jochum et al.   Nature Ecology & Evolution

Niche differentiation of comammox Nitrospira and canonical ammonia oxidizers in soil aggregate fractions following 27-year fertilizations

(2020) Yongxin Lin et al.   AGRICULTURE ECOSYSTEMS & ENVIRONMENT

Manure application increases microbiome complexity in soil aggregate fractions: Results of an 18-year field experiment

(2020) Guiping Ye et al.   AGRICULTURE ECOSYSTEMS & ENVIRONMENT

Agricultural intensification reduces microbial network complexity and the abundance of keystone taxa in roots

(2019) Samiran Banerjee et al.   ISME Journal

Responses of soil fungal diversity and community composition to long-term fertilization: Field experiment in an acidic Ultisol and literature synthesis

(2019) Guiping Ye et al.   APPLIED SOIL ECOLOGY

Linking bacterial community to aggregate fractions with organic amendments in a sandy soil

(2019) Hongcui Dai et al.   LAND DEGRADATION & DEVELOPMENT

Long-term manure application increases soil organic matter and aggregation, and alters microbial community structure and keystone taxa

(2019) Yongxin Lin et al.   SOIL BIOLOGY & BIOCHEMISTRY

Long-term organic fertilization improves the productivity of kiwifruit (Actinidia chinensis Planch.) through increasing rhizosphere microbial diversity and network complexity

(2019) Zhe Liu et al.   APPLIED SOIL ECOLOGY

Long‐term effects of nitrogen and phosphorus fertilization on soil microbial community structure and function under continuous wheat production

(2019) Yunliang Li et al.   ENVIRONMENTAL MICROBIOLOGY

Viral abundance and diversity vary with depth in a southeastern United States agricultural ultisol

(2019) Xiaolong Liang et al.   SOIL BIOLOGY & BIOCHEMISTRY

Fungal-bacterial diversity and microbiome complexity predict ecosystem functioning

(2019) Cameron Wagg et al.   Nature Communications

Deciphering the associations between soil microbial diversity and ecosystem multifunctionality driven by long-term fertilization management

(2018) Gongwen Luo et al.   FUNCTIONAL ECOLOGY

Keystone taxa as drivers of microbiome structure and functioning

(2018) Samiran Banerjee et al.   NATURE REVIEWS MICROBIOLOGY

Composition and functional diversity of microbial community across a mangrove-inhabited mudflat as revealed by 16S rDNA gene sequences

(2018) Xiaoying Zhang et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Long-term application of lime or pig manure rather than plant residues suppressed diazotroph abundance and diversity and altered community structure in an acidic Ultisol

(2018) Yongxin Lin et al.   SOIL BIOLOGY & BIOCHEMISTRY

Long-term application of manure over plant residues mitigates acidification, builds soil organic carbon and shifts prokaryotic diversity in acidic Ultisols

(2018) Guiping Ye et al.   APPLIED SOIL ECOLOGY

Bacterial contributions to delignification and lignocellulose degradation in forest soils with metagenomic and quantitative stable isotope probing

(2018) Roland C. Wilhelm et al.   ISME Journal

Linking microbial co-occurrences to soil ecological processes across a woodland-grassland ecotone

(2018) Samiran Banerjee et al.   Ecology and Evolution

Carbon and nitrogen availability in paddy soil affects rice photosynthate allocation, microbial community composition, and priming: combining continuous 13C labeling with PLFA analysis

(2018) Ziwei Zhao et al.   PLANT AND SOIL

Assessing fungal contributions to cellulose degradation in soil by using high-throughput stable isotope probing

(2018) Chantal Koechli et al.   SOIL BIOLOGY & BIOCHEMISTRY

Assessment of soil microbial communities involved in cellulose utilization at two contrasting Alpine forest sites

(2018) José A. Siles et al.   SOIL BIOLOGY & BIOCHEMISTRY

Microbial diversity and ecological networks as indicators of environmental quality

(2017) Battle Karimi et al.   Environmental Chemistry Letters

Impact of 25 years of inorganic fertilization on diazotrophic abundance and community structure in an acidic soil in southern China

(2017) Chao Wang et al.   SOIL BIOLOGY & BIOCHEMISTRY

Long-term effects of imbalanced fertilization on the composition and diversity of soil bacterial community

(2016) Jinu Eo et al.   AGRICULTURE ECOSYSTEMS & ENVIRONMENT

Effect of 35 years inorganic fertilizer and manure amendment on structure of bacterial and archaeal communities in black soil of northeast China

(2016) Jianli Ding et al.   APPLIED SOIL ECOLOGY

The impact of manure, straw and biochar amendments on aggregation and erosion in a hillslope Ultisol

(2016) X. Peng et al.   CATENA

FUNGuild: An open annotation tool for parsing fungal community datasets by ecological guild

(2016) Nhu H. Nguyen et al.   Fungal Ecology

Decoupling function and taxonomy in the global ocean microbiome

(2016) S. Louca et al.   SCIENCE

Thirty four years of nitrogen fertilization decreases fungal diversity and alters fungal community composition in black soil in northeast China

(2016) Jing Zhou et al.   SOIL BIOLOGY & BIOCHEMISTRY

Wheat and Rice Growth Stages and Fertilization Regimes Alter Soil Bacterial Community Structure, But Not Diversity

(2016) Jichen Wang et al.   Frontiers in Microbiology

Mineral vs. Organic Amendments: Microbial Community Structure, Activity and Abundance of Agriculturally Relevant Microbes Are Driven by Long-Term Fertilization Strategies

(2016) Davide Francioli et al.   Frontiers in Microbiology

Unearthing the Ecology of Soil Microorganisms Using a High Resolution DNA-SIP Approach to Explore Cellulose and Xylose Metabolism in Soil

(2016) Charles Pepe-Ranney et al.   Frontiers in Microbiology

Significant alteration of soil bacterial communities and organic carbon decomposition by different long-term fertilization management conditions of extremely low-productivity arable soil in South China

(2015) Weibing Xun et al.   ENVIRONMENTAL MICROBIOLOGY

Bacterial diversity in soils subjected to long-term chemical fertilization can be more stably maintained with the addition of livestock manure than wheat straw

(2015) Ruibo Sun et al.   SOIL BIOLOGY & BIOCHEMISTRY

Sugars in soil and sweets for microorganisms: Review of origin, content, composition and fate

(2015) Anna Gunina et al.   SOIL BIOLOGY & BIOCHEMISTRY

Linking Biodiversity and Ecosystem Services: Current Uncertainties and the Necessary Next Steps

(2014) Patricia Balvanera et al.   BIOSCIENCE

Divergent Responses of Soil Fungi Functional Groups to Short-term Warming

(2014) Jinbo Xiong et al.   MICROBIAL ECOLOGY

Potential of Cometabolic Transformation of Polysaccharides and Lignin in Lignocellulose by Soil Actinobacteria

(2014) Tomáš Větrovský et al.   PLoS One

Omics-based interpretation of synergism in a soil-derived cellulose-degrading microbial community

(2014) Yizhuang Zhou et al.   Scientific Reports

UPARSE: highly accurate OTU sequences from microbial amplicon reads

(2013) Robert C Edgar   NATURE METHODS

Identification of Cellulose-Responsive Bacterial and Fungal Communities in Geographically and Edaphically Different Soils by Using Stable Isotope Probing

(2012) Stephanie A. Eichorst et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Consistent effects of nitrogen amendments on soil microbial communities and processes across biomes

(2012) Kelly S. Ramirez et al.   GLOBAL CHANGE BIOLOGY

Who is who in litter decomposition? Metaproteomics reveals major microbial players and their biogeochemical functions

(2012) Thomas Schneider et al.   ISME Journal

UCHIME improves sensitivity and speed of chimera detection

(2011) Robert C. Edgar et al.   BIOINFORMATICS

FLASH: fast length adjustment of short reads to improve genome assemblies

(2011) T. Magoc et al.   BIOINFORMATICS

Detecting Novel Associations in Large Data Sets

(2011) D. N. Reshef et al.   SCIENCE

Pyrosequencing and mid-infrared spectroscopy reveal distinct aggregate stratification of soil bacterial communities and organic matter composition

(2011) Marko Davinic et al.   SOIL BIOLOGY & BIOCHEMISTRY

Differential Growth Responses of Soil Bacterial Taxa to Carbon Substrates of Varying Chemical Recalcitrance

(2011) Katherine C. Goldfarb et al.   Frontiers in Microbiology

Effects of long-term fertilization on corn productivity and its sustainability in an Ultisol of southern China

(2010) Shan Huang et al.   AGRICULTURE ECOSYSTEMS & ENVIRONMENT

Identifying biologically relevant differences between metagenomic communities

(2010) Donovan H. Parks et al.   BIOINFORMATICS

Soil bacterial and fungal communities across a pH gradient in an arable soil

(2010) Johannes Rousk et al.   ISME Journal

Fungi mediate long term sequestration of carbon and nitrogen in soil through their priming effect

(2010) S. Fontaine et al.   SOIL BIOLOGY & BIOCHEMISTRY

Microbial communities and their relevance for ecosystem models: Decomposition as a case study

(2009) Krista L. McGuire et al.   SOIL BIOLOGY & BIOCHEMISTRY

Antagonistic and synergistic effects of fungal and bacterial growth in soil after adding different carbon and nitrogen sources

(2008) Sandra Meidute et al.   SOIL BIOLOGY & BIOCHEMISTRY