Linking microbial co-occurrences to soil ecological processes across a woodland-grassland ecotone

Keystone taxa as drivers of microbiome structure and functioning

(2018) Samiran Banerjee et al.   NATURE REVIEWS MICROBIOLOGY

Cropping practices manipulate abundance patterns of root and soil microbiome members paving the way to smart farming

(2018) Kyle Hartman et al.   Microbiome

Deterministic influences exceed dispersal effects on hydrologically-connected microbiomes

(2017) Emily B. Graham et al.   ENVIRONMENTAL MICROBIOLOGY

Edge responses are different in edges under natural versus anthropogenic influence: a meta-analysis using ground beetles

(2017) Tibor Magura et al.   Ecology and Evolution

Soil C and N as causal factors of spatial variation in extracellular enzyme activity across grassland-woodland ecotones

(2016) Samiran Banerjee et al.   APPLIED SOIL ECOLOGY

Network-based metabolic analysis and microbial community modeling

(2016) Cesar Cardona et al.   CURRENT OPINION IN MICROBIOLOGY

The interconnected rhizosphere: High network complexity dominates rhizosphere assemblages

(2016) Shengjing Shi et al.   ECOLOGY LETTERS

Geographic patterns of co-occurrence network topological features for soil microbiota at continental scale in eastern China

(2016) Bin Ma et al.   ISME Journal

Network analysis reveals functional redundancy and keystone taxa amongst bacterial and fungal communities during organic matter decomposition in an arable soil

(2016) Samiran Banerjee et al.   SOIL BIOLOGY & BIOCHEMISTRY

Meta-analysis reveals ammonia-oxidizing bacteria respond more strongly to nitrogen addition than ammonia-oxidizing archaea

(2016) Chelsea J. Carey et al.   SOIL BIOLOGY & BIOCHEMISTRY

Microbes as Engines of Ecosystem Function: When Does Community Structure Enhance Predictions of Ecosystem Processes?

(2016) Emily B. Graham et al.   Frontiers in Microbiology

Introducing BASE: the Biomes of Australian Soil Environments soil microbial diversity database

(2016) Andrew Bissett et al.   GigaScience

Determinants of bacterial communities in Canadian agroforestry systems

(2015) Samiran Banerjee et al.   ENVIRONMENTAL MICROBIOLOGY

Mycorrhizal ecology and evolution: the past, the present, and the future

(2015) Marcel G. A. van der Heijden et al.   NEW PHYTOLOGIST

Fire dynamics distinguish grasslands, shrublands and woodlands as alternative attractors in the Central Great Plains of North America

(2015) Zak Ratajczak et al.   JOURNAL OF ECOLOGY

Shifts in plant functional types have time-dependent and regionally variable impacts on dryland ecosystem water balance

(2015) John B. Bradford et al.   JOURNAL OF ECOLOGY

Grass-woodland transitions: determinants and consequences for ecosystem functioning and provisioning of services

(2015) Osvaldo E. Sala et al.   JOURNAL OF ECOLOGY

An ecosystem services perspective on brush management: research priorities for competing land-use objectives

(2015) Steven R. Archer et al.   JOURNAL OF ECOLOGY

Climate change will increase savannas at the expense of forests and treeless vegetation in tropical and subtropical Americas

(2015) José D. Anadón et al.   JOURNAL OF ECOLOGY

Asymmetrical responses of forest and “beyond edge” arthropod communities across a forest–grassland ecotone

(2014) Federica Lacasella et al.   BIODIVERSITY AND CONSERVATION

The Gut Commensal Bacteroides thetaiotaomicron Exacerbates Enteric Infection through Modification of the Metabolic Landscape

(2014) Meredith M. Curtis et al.   Cell Host & Microbe

Network analysis reveals that bacteria and fungi form modules that correlate independently with soil parameters

(2014) Alexandre B. de Menezes et al.   ENVIRONMENTAL MICROBIOLOGY

Direct and indirect impacts of climate change on microbial and biocrust communities alter the resistance of the N cycle in a semiarid grassland

(2014) Manuel Delgado-Baquerizo et al.   JOURNAL OF ECOLOGY

Soil Fungal Communities Respond to Grassland Plant Community Richness and Soil Edaphics

(2014) Nicholas LeBlanc et al.   MICROBIAL ECOLOGY

Belowground biodiversity and ecosystem functioning

(2014) Richard D. Bardgett et al.   NATURE

Identifying Keystone Species in the Human Gut Microbiome from Metagenomic Timeseries Using Sparse Linear Regression

(2014) Charles K. Fisher et al.   PLoS One

Deciphering microbial interactions and detecting keystone species with co-occurrence networks

(2014) David Berry et al.   Frontiers in Microbiology

Microbial community responses to anthropogenically induced environmental change: towards a systems approach

(2013) Andrew Bissett et al.   ECOLOGY LETTERS

Modular community structure suggests metabolic plasticity during the transition to polar night in ice-covered Antarctic lakes

(2013) Trista J Vick-Majors et al.   ISME Journal

Nitrification rates in Arctic soils are associated with functionally distinct populations of ammonia-oxidizing archaea

(2013) Ricardo J Eloy Alves et al.   ISME Journal

UPARSE: highly accurate OTU sequences from microbial amplicon reads

(2013) Robert C Edgar   NATURE METHODS

Seasonal patterns of microbial extracellular enzyme activities in an arctic tundra soil: Identifying direct and indirect effects of long-term summer warming

(2013) Seeta A. Sistla et al.   SOIL BIOLOGY & BIOCHEMISTRY

Diversity, Physiology, and Niche Differentiation of Ammonia-Oxidizing Archaea

(2012) Roland Hatzenpichler   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

The keystone-pathogen hypothesis

(2012) George Hajishengallis et al.   NATURE REVIEWS MICROBIOLOGY

Microbial interactions: from networks to models

(2012) Karoline Faust et al.   NATURE REVIEWS MICROBIOLOGY

Archaeal and bacterial ammonia-oxidisers in soil: the quest for niche specialisation and differentiation

(2012) James I. Prosser et al.   TRENDS IN MICROBIOLOGY

Microbial control over carbon cycling in soil

(2012) Joshua P. Schimel et al.   Frontiers in Microbiology

FLASH: fast length adjustment of short reads to improve genome assemblies

(2011) T. Magoc et al.   BIOINFORMATICS

Impacts of shrub encroachment on ecosystem structure and functioning: towards a global synthesis

(2011) David J. Eldridge et al.   ECOLOGY LETTERS

Marine bacterial, archaeal and protistan association networks reveal ecological linkages

(2011) Joshua A Steele et al.   ISME Journal

Using network analysis to explore co-occurrence patterns in soil microbial communities

(2011) Albert Barberán et al.   ISME Journal

Detecting Novel Associations in Large Data Sets

(2011) D. N. Reshef et al.   SCIENCE

Search and clustering orders of magnitude faster than BLAST

(2010) Robert C. Edgar   BIOINFORMATICS

Fungal community composition and function after long-term exposure of northern forests to elevated atmospheric CO2 and tropospheric O3

(2010) IVAN P. EDWARDS et al.   GLOBAL CHANGE BIOLOGY

Response of ammonia oxidizing archaea and bacteria to changing water filled pore space

(2010) Deirdre B. Gleeson et al.   SOIL BIOLOGY & BIOCHEMISTRY

Introducing mothur: Open-Source, Platform-Independent, Community-Supported Software for Describing and Comparing Microbial Communities

(2009) P. D. Schloss et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Bacteriarather thanArchaeadominate microbial ammonia oxidation in an agricultural soil

(2009) Zhongjun Jia et al.   ENVIRONMENTAL MICROBIOLOGY

A comprehensive survey of soil acidobacterial diversity using pyrosequencing and clone library analyses

(2009) Ryan T Jones et al.   ISME Journal

Microbial community structure and its functional implications

(2009) Jed A. Fuhrman   NATURE

Nitrification driven by bacteria and not archaea in nitrogen-rich grassland soils

(2009) H. J. Di et al.   Nature Geoscience

Acquisition of phosphorus and nitrogen in the rhizosphere and plant growth promotion by microorganisms

(2009) Alan E. Richardson et al.   PLANT AND SOIL

The unseen majority: soil microbes as drivers of plant diversity and productivity in terrestrial ecosystems

(2008) Marcel G. A. van der Heijden et al.   ECOLOGY LETTERS

Edge effects and trampling in boreal urban forest fragments – impacts on the soil microbial community

(2008) Minna Malmivaara-Lämsä et al.   SOIL BIOLOGY & BIOCHEMISTRY

The influence of soil properties on the structure of bacterial and fungal communities across land-use types

(2008) Christian L. Lauber et al.   SOIL BIOLOGY & BIOCHEMISTRY