Improved Duplication-Transfer-Loss Reconciliation with Extinct and Unsampled Lineages
Published 2021 View Full Article
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Title
Improved Duplication-Transfer-Loss Reconciliation with Extinct and Unsampled Lineages
Authors
Keywords
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Journal
Algorithms
Volume 14, Issue 8, Pages 231
Publisher
MDPI AG
Online
2021-08-05
DOI
10.3390/a14080231
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Note: Only part of the references are listed.- eMPRess: a systematic cophylogeny reconciliation tool
- (2020) Santi Santichaivekin et al. BIOINFORMATICS
- Gene tree reconciliation including transfers with replacement is NP-hard and FPT
- (2019) Damir Hasić et al. JOURNAL OF COMBINATORIAL OPTIMIZATION
- Zombi: A phylogenetic simulator of trees, genomes and sequences that accounts for dead linages
- (2019) Adrián A Davín et al. BIOINFORMATICS
- RANGER-DTL 2.0: rigorous reconstruction of gene-family evolution by duplication, transfer and loss
- (2018) Mukul S Bansal et al. BIOINFORMATICS
- Exact Algorithms for Duplication-Transfer-Loss Reconciliation with Non-Binary Gene Trees
- (2017) Misagh Kordi et al. IEEE-ACM Transactions on Computational Biology and Bioinformatics
- ecceTERA: comprehensive gene tree-species tree reconciliation using parsimony: Table 1.
- (2016) Edwin Jacox et al. BIOINFORMATICS
- EUCALYPT: efficient tree reconciliation enumerator
- (2015) Beatrice Donati et al. Algorithms for Molecular Biology
- Improved gene tree error correction in the presence of horizontal gene transfer
- (2015) Mukul S. Bansal et al. BIOINFORMATICS
- Joint amalgamation of most parsimonious reconciled gene trees
- (2014) Celine Scornavacca et al. BIOINFORMATICS
- Pareto-optimal phylogenetic tree reconciliation
- (2014) Ran Libeskind-Hadas et al. BIOINFORMATICS
- A Bayesian Method for Analyzing Lateral Gene Transfer
- (2014) J. Sjostrand et al. SYSTEMATIC BIOLOGY
- Reconciliation Revisited: Handling Multiple Optima when Reconciling with Duplication, Transfer, and Loss
- (2013) Mukul S. Bansal et al. JOURNAL OF COMPUTATIONAL BIOLOGY
- Lateral Gene Transfer from the Dead
- (2013) Gergely J. Szöllősi et al. SYSTEMATIC BIOLOGY
- Efficient algorithms for the reconciliation problem with gene duplication, horizontal transfer and loss
- (2012) Mukul S. Bansal et al. BIOINFORMATICS
- Inferring duplications, losses, transfers and incomplete lineage sorting with nonbinary species trees
- (2012) Maureen Stolzer et al. BIOINFORMATICS
- Quantifying Homologous Replacement of Loci between Haloarchaeal Species
- (2012) David Williams et al. Genome Biology and Evolution
- Simultaneous Identification of Duplications, Losses, and Lateral Gene Transfers
- (2012) Zhi-Zhong Chen et al. IEEE-ACM Transactions on Computational Biology and Bioinformatics
- Phylogenetic modeling of lateral gene transfer reconstructs the pattern and relative timing of speciations
- (2012) G. J. Szollosi et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- REPRESENTING A SET OF RECONCILIATIONS IN A COMPACT WAY
- (2012) CELINE SCORNAVACCA et al. Journal of Bioinformatics and Computational Biology
- Jane: a new tool for the cophylogeny reconstruction problem
- (2010) Chris Conow et al. Algorithms for Molecular Biology
- A parameter-adaptive dynamic programming approach for inferring cophylogenies
- (2010) Daniel Merkle et al. BMC BIOINFORMATICS
- Simultaneous Identification of Duplications and Lateral Gene Transfers
- (2010) A Tofigh et al. IEEE-ACM Transactions on Computational Biology and Bioinformatics
- The Cophylogeny Reconstruction Problem Is NP-Complete
- (2010) Y. Ovadia et al. JOURNAL OF COMPUTATIONAL BIOLOGY
- Rapid evolutionary innovation during an Archaean genetic expansion
- (2010) Lawrence A. David et al. NATURE
- On the Computational Complexity of the Reticulate Cophylogeny Reconstruction Problem
- (2009) Ran Libeskind-Hadas et al. JOURNAL OF COMPUTATIONAL BIOLOGY
- Reconstructing the evolution of genes along the species tree
- (2009) K. Yu. Gorbunov et al. MOLECULAR BIOLOGY
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