On the importance of skewed offspring distributions and background selection in virus population genetics
Published 2016 View Full Article
- Home
- Publications
- Publication Search
- Publication Details
Title
On the importance of skewed offspring distributions and background selection in virus population genetics
Authors
Keywords
-
Journal
HEREDITY
Volume 117, Issue 6, Pages 393-399
Publisher
Springer Nature
Online
2016-09-21
DOI
10.1038/hdy.2016.58
References
Ask authors/readers for more resources
Related references
Note: Only part of the references are listed.- An Approximate Markov Model for the Wright–Fisher Diffusion and Its Application to Time Series Data
- (2016) Anna Ferrer-Admetlla et al. GENETICS
- A Balance between Inhibitor Binding and Substrate Processing Confers Influenza Drug Resistance
- (2016) Li Jiang et al. JOURNAL OF MOLECULAR BIOLOGY
- The site-frequency spectrum associated with Ξ-coalescents
- (2016) Jochen Blath et al. THEORETICAL POPULATION BIOLOGY
- An Approximate Markov Model for the Wright–Fisher Diffusion and Its Application to Time Series Data
- (2016) Anna Ferrer-Admetlla et al. GENETICS
- Hybrid-Lambda: simulation of multiple merger and Kingman gene genealogies in species networks and species trees
- (2015) Sha Zhu et al. BMC BIOINFORMATICS
- Distribution of mutational fitness effects and of epistasis in the 5’ untranslated region of a plant RNA virus
- (2015) Guillermo P. Bernet et al. BMC EVOLUTIONARY BIOLOGY
- Can the Site-Frequency Spectrum Distinguish Exponential Population Growth from Multiple-Merger Coalescents?
- (2015) B. Eldon et al. GENETICS
- Methods to characterize selective sweeps using time serial samples: an ancient DNA perspective
- (2015) Anna-Sapfo Malaspinas MOLECULAR ECOLOGY
- On the relative roles of background selection and genetic hitchhiking in shaping human cytomegalovirus genetic diversity
- (2015) Nicholas Renzette et al. MOLECULAR ECOLOGY
- The consequences of not accounting for background selection in demographic inference
- (2015) Gregory B. Ewing et al. MOLECULAR ECOLOGY
- Extremely High Mutation Rate of HIV-1 In Vivo
- (2015) José M. Cuevas et al. PLOS BIOLOGY
- A C++ Template Library for Efficient Forward-Time Population Genetic Simulation of Large Populations
- (2014) Kevin R. Thornton GENETICS
- A Bayesian MCMC Approach to Assess the Complete Distribution of Fitness Effects of New Mutations: Uncovering the Potential for Adaptive Walks in Challenging Environments
- (2014) C. Bank et al. GENETICS
- Fifteen to Twenty Percent of HIV Substitution Mutations Are Associated with Recombination
- (2014) T. E. Schlub et al. JOURNAL OF VIROLOGY
- Coalescence 2.0: a multiple branching of recent theoretical developments and their applications
- (2014) Aurélien Tellier et al. MOLECULAR ECOLOGY
- WFABC: a Wright-Fisher ABC-based approach for inferring effective population sizes and selection coefficients from time-sampled data
- (2014) Matthieu Foll et al. Molecular Ecology Resources
- A fitness bottleneck in HIV-1 transmission
- (2014) S. B. Joseph et al. SCIENCE
- Influenza Virus Drug Resistance: A Time-Sampled Population Genetics Perspective
- (2014) Matthieu Foll et al. PLoS Genetics
- Background Selection as Baseline for Nucleotide Variation across the Drosophila Genome
- (2014) Josep M. Comeron PLoS Genetics
- Loss and Recovery of Genetic Diversity in Adapting Populations of HIV
- (2014) Pleuni S. Pennings et al. PLoS Genetics
- SLiM: Simulating Evolution with Selection and Linkage
- (2013) Philipp W. Messer GENETICS
- Mutational and fitness landscapes of an RNA virus revealed through population sequencing
- (2013) Ashley Acevedo et al. NATURE
- The role of mutational robustness in RNA virus evolution
- (2013) Adam S. Lauring et al. NATURE REVIEWS MICROBIOLOGY
- Analysis of DNA sequence variation within marine species using Beta-coalescents
- (2013) Matthias Steinrücken et al. THEORETICAL POPULATION BIOLOGY
- Rapid Intrahost Evolution of Human Cytomegalovirus Is Shaped by Demography and Positive Selection
- (2013) Nicholas Renzette et al. PLoS Genetics
- Asymptotics of the Allele Frequency Spectrum Associated with the Bolthausen-Sznitman Coalescent
- (2012) Anne-Laure Basdevant et al. ELECTRONIC JOURNAL OF PROBABILITY
- Coalescent processes in subdivided populations subject to recurrent mass extinctions
- (2012) Jesse Taylor et al. ELECTRONIC JOURNAL OF PROBABILITY
- An Ancestral Recombination Graph for Diploid Populations with Skewed Offspring Distribution
- (2012) M. Birkner et al. GENETICS
- Estimating Allele Age and Selection Coefficient from Time-Serial Data
- (2012) A.-S. Malaspinas et al. GENETICS
- Clonal Interference in the Evolution of Influenza
- (2012) N. Strelkowa et al. GENETICS
- A coalescent model of background selection with recombination, demography and variation in selection coefficients
- (2012) K Zeng HEREDITY
- Genealogies of rapidly adapting populations
- (2012) R. A. Neher et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Multiple merger gene genealogies in two species: Monophyly, paraphyly, and polyphyly for two examples of Lambda coalescents
- (2012) Bjarki Eldon et al. THEORETICAL POPULATION BIOLOGY
- Virus population bottlenecks during within-host progression and host-to-host transmission
- (2012) Serafín Gutiérrez et al. Current Opinion in Virology
- The Joint Effects of Background Selection and Genetic Recombination on Local Gene Genealogies
- (2011) Kai Zeng et al. GENETICS
- Joint analysis of demography and selection in population genetics: where do we stand and where could we go?
- (2011) JUNRUI LI et al. MOLECULAR ECOLOGY
- Why do RNA viruses recombine?
- (2011) Etienne Simon-Loriere et al. NATURE REVIEWS MICROBIOLOGY
- Population Genetics Models with Skewed Fertilities: A Forward and Backward Analysis
- (2011) Thierry Huillet et al. STOCHASTIC MODELS
- Generalized population models and the nature of genetic drift
- (2011) Ricky Der et al. THEORETICAL POPULATION BIOLOGY
- Tracking a century of global expansion and evolution of HIV to drive understanding and to combat disease
- (2010) Denis M Tebit et al. LANCET INFECTIOUS DISEASES
- Mutational fitness effects in RNA and single-stranded DNA viruses: common patterns revealed by site-directed mutagenesis studies
- (2010) R. Sanjuan PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES
- Evolutionary analysis of the dynamics of viral infectious disease
- (2009) Oliver G. Pybus et al. NATURE REVIEWS GENETICS
- Small-time behavior of beta coalescents
- (2008) Julien Berestycki et al. ANNALES DE L INSTITUT HENRI POINCARE-PROBABILITES ET STATISTIQUES
- A flexible forward simulator for populations subject to selection and demography
- (2008) R. D. Hernandez BIOINFORMATICS
- Coalescence Times and FST Under a Skewed Offspring Distribution Among Individuals in a Population
- (2008) B. Eldon et al. GENETICS
- Linkage Disequilibrium Under Skewed Offspring Distribution Among Individuals in a Population
- (2008) B. Eldon et al. GENETICS
- Computing likelihoods for coalescents with multiple collisions in the infinitely many sites model
- (2008) Matthias Birkner et al. JOURNAL OF MATHEMATICAL BIOLOGY
- Growth of an RNA virus in single cells reveals a broad fitness distribution
- (2008) Ying Zhu et al. VIROLOGY
Find Funding. Review Successful Grants.
Explore over 25,000 new funding opportunities and over 6,000,000 successful grants.
ExploreAdd your recorded webinar
Do you already have a recorded webinar? Grow your audience and get more views by easily listing your recording on Peeref.
Upload Now