On the relative roles of background selection and genetic hitchhiking in shaping human cytomegalovirus genetic diversity

Worldwide Population Structure, Long-Term Demography, and Local Adaptation of Helicobacter pylori

(2015) Valeria Montano et al.   GENETICS

Limits and patterns of cytomegalovirus genomic diversity in humans

(2015) Nicholas Renzette et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Worldwide Population Structure, Long-Term Demography, and Local Adaptation of Helicobacter pylori

(2015) Valeria Montano et al.   GENETICS

The pathogenesis of human cytomegalovirus

(2014) Paul Griffiths et al.   JOURNAL OF PATHOLOGY

PopGenome: An Efficient Swiss Army Knife for Population Genomic Analyses in R

(2014) Bastian Pfeifer et al.   MOLECULAR BIOLOGY AND EVOLUTION

Temporal and Spatial Compartmentalization of Drug-Resistant Cytomegalovirus (CMV) in a Child with CMV Meningoencephalitis: Implications for Sampling in Molecular Diagnosis

(2013) P. Frange et al.   JOURNAL OF CLINICAL MICROBIOLOGY

Background Selection 20 Years on

(2013) Brian Charlesworth   JOURNAL OF HEREDITY

Genomic signatures of selection at linked sites: unifying the disparity among species

(2013) Asher D. Cutter et al.   NATURE REVIEWS GENETICS

Whole Transcriptome Sequencing Enables Discovery and Analysis of Viruses in Archived Primary Central Nervous System Lymphomas

(2013) Christopher DeBoever et al.   PLoS One

Rapid Intrahost Evolution of Human Cytomegalovirus Is Shaped by Demography and Positive Selection

(2013) Nicholas Renzette et al.   PLoS Genetics

The impact of equilibrium assumptions on tests of selection

(2013) Jessica L. Crisci et al.   Frontiers in Genetics

Clonal Interference in the Evolution of Influenza

(2012) N. Strelkowa et al.   GENETICS

Species Specificity of Protein Kinase R Antagonism by Cytomegalovirus TRS1 Genes

(2012) S. J. Child et al.   JOURNAL OF VIROLOGY

Chromosome-scale selective sweeps shape Caenorhabditis elegans genomic diversity

(2012) Erik C Andersen et al.   NATURE GENETICS

Recombination in Hepatitis C Virus: Identification of Four Novel Naturally Occurring Inter-Subtype Recombinants

(2012) Weifeng Shi et al.   PLoS One

Decoding Human Cytomegalovirus

(2012) N. Stern-Ginossar et al.   SCIENCE

Human cytomegalovirus: an enormous variety of strains and their possible clinical significance in the human host

(2011) Elisabeth Puchhammer-Stöckl et al.   Future Virology

Mixed Infection and Strain Diversity in Congenital Cytomegalovirus Infection

(2011) Shannon A. Ross et al.   JOURNAL OF INFECTIOUS DISEASES

Temporal Variations in the Hepatitis C Virus Intrahost Population during Chronic Infection

(2011) S. Ramachandran et al.   JOURNAL OF VIROLOGY

High-Resolution Profiling and Analysis of Viral and Host Small RNAs during Human Cytomegalovirus Infection

(2011) T. J. Stark et al.   JOURNAL OF VIROLOGY

Polymorphism, Divergence, and the Role of Recombination in Saccharomyces cerevisiae Genome Evolution

(2011) A. D. Cutter et al.   MOLECULAR BIOLOGY AND EVOLUTION

Natural Selection in Gene-Dense Regions Shapes the Genomic Pattern of Polymorphism in Wild and Domesticated Rice

(2011) J. M. Flowers et al.   MOLECULAR BIOLOGY AND EVOLUTION

High-resolution human cytomegalovirus transcriptome

(2011) D. Gatherer et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Natural Selection Affects Multiple Aspects of Genetic Variation at Putatively Neutral Sites across the Human Genome

(2011) Kirk E. Lohmueller et al.   PLoS Genetics

Extensive Genome-Wide Variability of Human Cytomegalovirus in Congenitally Infected Infants

(2011) Nicholas Renzette et al.   PLoS Pathogens

A genome-wide view of mutation rate co-variation using multivariate analyses

(2011) Guruprasad Ananda et al.   GENOME BIOLOGY

Searching for Footprints of Positive Selection in Whole-Genome SNP Data From Nonequilibrium Populations

(2010) P. Pavlidis et al.   GENETICS

Reconstruction of the complete human cytomegalovirus genome in a BAC reveals RL13 to be a potent inhibitor of replication

(2010) Richard J. Stanton et al.   JOURNAL OF CLINICAL INVESTIGATION

Genetic hitchhiking versus background selection: the controversy and its implications

(2010) W. Stephan   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Rate, molecular spectrum, and consequences of human mutation

(2010) M. Lynch   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

High-throughput sequence analysis of variants of human cytomegalovirus strains Towne and AD169

(2009) A. J. Bradley et al.   JOURNAL OF GENERAL VIROLOGY

Sequences of complete human cytomegalovirus genomes from infected cell cultures and clinical specimens

(2009) C. Cunningham et al.   JOURNAL OF GENERAL VIROLOGY

Comparisons of mutation rate variation at genome-wide microsatellites: evolutionary insights from two cultivated rice and their wild relatives

(2008) Li-zhi Gao et al.   BMC EVOLUTIONARY BIOLOGY

A genome-wide view of the spectrum of spontaneous mutations in yeast

(2008) M. Lynch et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Origin, Spread and Demography of the Mycobacterium tuberculosis Complex

(2008) Thierry Wirth et al.   PLoS Pathogens