Telomere-to-telomere gapless chromosomes of banana using nanopore sequencing

Efficient assembly of nanopore reads via highly accurate and intact error correction

(2021) Ying Chen et al.   Nature Communications

Editorial: Fusarium Wilt of Banana, a Recurring Threat to Global Banana Production

(2021) Gert H. J. Kema et al.   Frontiers in Plant Science

Genome ancestry mosaics reveal multiple and cryptic contributors to cultivated banana

(2020) Guillaume Martin et al.   PLANT JOURNAL

Building near-complete plant genomes

(2020) Todd P Michael et al.   CURRENT OPINION IN PLANT BIOLOGY

The NLR-Annotator tool enables annotation of the intracellular immune receptor repertoire

(2020) Burkhard Steuernagel et al.   PLANT PHYSIOLOGY

Telomere-to-telomere assembly of a complete human X chromosome

(2020) Karen H. Miga et al.   NATURE

Genome assembly of wild tea tree DASZ reveals pedigree and selection history of tea varieties

(2020) Weiyi Zhang et al.   Nature Communications

Centromere studies in the era of ‘telomere-to-telomere’ genomics

(2020) Karen H. Miga   EXPERIMENTAL CELL RESEARCH

Genetic mapping of Fusarium wilt resistance in a wild banana Musa acuminata ssp. malaccensis accession

(2020) Fajarudin Ahmad et al.   THEORETICAL AND APPLIED GENETICS

Comparison of the two up-to-date sequencing technologies for genome assembly: HiFi reads of Pacific Biosciences Sequel II system and ultralong reads of Oxford Nanopore

(2020) Dandan Lang et al.   GigaScience

Long-read assembly of the Brassica napus reference genome Darmor-bzh

(2020) Mathieu Rousseau-Gueutin et al.   GigaScience

Assembly of long, error-prone reads using repeat graphs

(2019) Mikhail Kolmogorov et al.   NATURE BIOTECHNOLOGY

A Comprehensive Survey on the Terpene Synthase Gene Family Provides New Insight into Its Evolutionary Patterns

(2019) Shu-Ye Jiang et al.   Genome Biology and Evolution

Stronger When Together: Clustering of Plant NLR Disease resistance Genes

(2019) Solveig van Wersch et al.   TRENDS IN PLANT SCIENCE

Fast and accurate long-read assembly with wtdbg2

(2019) Jue Ruan et al.   NATURE METHODS

Amplification and adaptation of centromeric repeats in polyploid switchgrass species

(2018) Xueming Yang et al.   NEW PHYTOLOGIST

Molecular and Cytogenetic Study of East African Highland Banana

(2018) Alžběta Němečková et al.   Frontiers in Plant Science

Fast and accurate de novo genome assembly from long uncorrected reads

(2017) Robert Vaser et al.   GENOME RESEARCH

BUSCO Applications from Quality Assessments to Gene Prediction and Phylogenomics

(2017) Robert M Waterhouse et al.   MOLECULAR BIOLOGY AND EVOLUTION

De Novo Assembly of a NewSolanum pennelliiAccession Using Nanopore Sequencing

(2017) Maximilian H.-W. Schmidt et al.   PLANT CELL

Viral to metazoan marine plankton nucleotide sequences from the Tara Oceans expedition

(2017) Adriana Alberti et al.   Scientific Data

Assemblytics: a web analytics tool for the detection of variants from an assembly

(2016) Maria Nattestad et al.   BIOINFORMATICS

Improvement of the banana “Musa acuminata” reference sequence using NGS data and semi-automated bioinformatics methods

(2016) Guillaume Martin et al.   BMC GENOMICS

Evolution of gene duplication in plants

(2016) Nicholas Panchy et al.   PLANT PHYSIOLOGY

Centromere and telomere sequence alterations reflect the rapid genome evolution within the carnivorous plant genusGenlisea

(2015) Trung D. Tran et al.   PLANT JOURNAL

Repbase Update, a database of repetitive elements in eukaryotic genomes

(2015) Weidong Bao et al.   Mobile DNA

Fast and sensitive protein alignment using DIAMOND

(2014) Benjamin Buchfink et al.   NATURE METHODS

Functional characterization of three Coffea arabica L. monoterpene synthases: Insights into the enzymatic machinery of coffee aroma

(2013) Lorenzo Del Terra et al.   PHYTOCHEMISTRY

Molecular Analysis and Genomic Organization of Major DNA Satellites in Banana (Musa spp.)

(2013) Jana Čížková et al.   PLoS One

The Complete Chloroplast Genome of Banana (Musa acuminata, Zingiberales): Insight into Plastid Monocotyledon Evolution

(2013) Guillaume Martin et al.   PLoS One

The Banana Genome Hub

(2013) Gaëtan Droc et al.   Database-The Journal of Biological Databases and Curation

The banana (Musa acuminata) genome and the evolution of monocotyledonous plants

(2012) Angélique D’Hont et al.   NATURE

A Complete Sequence and Transcriptomic Analyses of Date Palm (Phoenix dactylifera L.) Mitochondrial Genome

(2012) Yongjun Fang et al.   PLoS One

The Tomato Terpene Synthase Gene Family

(2011) V. Falara et al.   PLANT PHYSIOLOGY

Plant centromeric retrotransposons: a structural and cytogenetic perspective

(2011) Pavel Neumann et al.   Mobile DNA

BEDTools: a flexible suite of utilities for comparing genomic features

(2010) Aaron R. Quinlan et al.   BIOINFORMATICS

Functional Annotation, Genome Organization and Phylogeny of the Grapevine (Vitis vinifera) Terpene Synthase Gene Family Based on Genome Assembly, FLcDNA Cloning, and Enzyme Assays

(2010) Diane M Martin et al.   BMC PLANT BIOLOGY

Black Leaf Streak Disease is challenging the banana industry

(2010) Luc de Lapeyre de Bellaire et al.   Fruits

Circos: An information aesthetic for comparative genomics

(2009) M. Krzywinski et al.   GENOME RESEARCH

Aggressive assembly of pyrosequencing reads with mates

(2008) Jason R. Miller et al.   BIOINFORMATICS

SOAP: short oligonucleotide alignment program

(2008) R. Li et al.   BIOINFORMATICS

Synteny and Collinearity in Plant Genomes

(2008) H. Tang et al.   SCIENCE