Differentiation of Lacticaseibacillus zeae Using Pan-Genome Analysis and Real-Time PCR Method Targeting a Unique Gene

Design of PCR assays to specifically detect and identify 37 Lactobacillus species in a single 96 well plate

(2020) Eiseul Kim et al.   BMC MICROBIOLOGY

Genome-based reclassification of Lactobacillus casei: emended classification and description of the species Lactobacillus zeae

(2020) Chien-Hsun Huang et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

A taxonomic note on the genus Lactobacillus: Description of 23 novel genera, emended description of the genus Lactobacillus Beijerinck 1901, and union of Lactobacillaceae and Leuconostocaceae

(2020) Jinshui Zheng et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

Comparative core/pan genome analysis of Vibrio cholerae isolates from Pakistan

(2020) Samia Zeb et al.   INFECTION GENETICS AND EVOLUTION

Novel real-time PCR assay for Lactobacillus casei group species using comparative genomics

(2020) Eiseul Kim et al.   FOOD MICROBIOLOGY

Proposal to reclassify Lactobacillus zhaodongensis, Lactobacillus zeae, Lactobacillus argentoratensis and Lactobacillus buchneri subsp. silagei as Lacticaseibacillus zhaodongensis comb. nov., Lacticaseibacillus zeae comb. nov., Lactiplantibacillus argentoratensis comb. nov. and Lentilactobacillus buchneri subsp. silagei comb. nov., respectively and Apilactobacillus kosoi as a later heterotypic synonym of Apilactobacillus micheneri

(2020) Dan Dan Liu et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

Real-time PCR assay for detecting Lactobacillus plantarum group using species/subspecies-specific genes identified by comparative genomics

(2020) Eiseul Kim et al.   LWT-FOOD SCIENCE AND TECHNOLOGY

Reanalysis of Lactobacillus paracasei Lbs2 Strain and Large-Scale Comparative Genomics Places Many Strains into Their Correct Taxonomic Position

(2019) Samrat Ghosh et al.   Microorganisms

Rapid species- and subspecies-specific level classification and identification of Lactobacillus casei group members using MALDI Biotyper combined with ClinProTools

(2018) Chien-Hsun Huang et al.   JOURNAL OF DAIRY SCIENCE

Identification and Classification for the Lactobacillus casei Group

(2018) Chien-Hsun Huang et al.   Frontiers in Microbiology

Next generation microbiological risk assessment: opportunities of whole genome sequencing (WGS) for foodborne pathogen surveillance, source tracking and risk assessment

(2017) Kalliopi Rantsiou et al.   INTERNATIONAL JOURNAL OF FOOD MICROBIOLOGY

Effective identification of Lactobacillus casei group species: genome-based selection of the gene mutL as the target of a novel multiplex PCR assay

(2017) Benedetta Bottari et al.   MICROBIOLOGY-SGM

Large-Scale Phylogenomics of the Lactobacillus casei Group Highlights Taxonomic Inconsistencies and Reveals Novel Clade-Associated Features

(2017) Sander Wuyts et al.   mSystems

BPGA- an ultra-fast pan-genome analysis pipeline

(2016) Narendrakumar M. Chaudhari et al.   Scientific Reports

Multiplex real-time PCR assays for detection of eight Shiga toxin-producing Escherichia coli in food samples by melting curve analysis

(2015) Prashant Singh et al.   INTERNATIONAL JOURNAL OF FOOD MICROBIOLOGY

A novel real-time PCR assay for the specific identification and quantification of Weissella viridescens in blood sausages

(2015) Erica M. Gómez-Rojo et al.   INTERNATIONAL JOURNAL OF FOOD MICROBIOLOGY

Practical identification of human originated Lactobacillus species by amplified ribosomal DNA restriction analysis (ARDRA) for probiotic use

(2015) Mehmet Öztürk et al.   MOLECULAR BIOLOGY REPORTS

Expanding the biotechnology potential of lactobacilli through comparative genomics of 213 strains and associated genera

(2015) Zhihong Sun et al.   Nature Communications

Anvi’o: an advanced analysis and visualization platform for ‘omics data

(2015) A. Murat Eren et al.   PeerJ

EpsAis an essential gene in exopolysaccharide production inLactobacillus johnsoniiFI9785

(2015) Enes Dertli et al.   Microbial Biotechnology

Use of highly variable gene (yycH) as DNA marker to resolve interspecific relationships within the Lactobacillus casei group and a target for developing novel species-specific PCR primers

(2014) Chien-Hsun Huang et al.   EUROPEAN FOOD RESEARCH AND TECHNOLOGY

Guidelines for validation of qualitative real-time PCR methods

(2014) S. Broeders et al.   TRENDS IN FOOD SCIENCE & TECHNOLOGY

Species-specific quantification of probiotic lactobacilli in yoghurt by quantitative real-time PCR

(2013) S.R. Herbel et al.   JOURNAL OF APPLIED MICROBIOLOGY

Stable and non-competitive association of Saccharomyces cerevisiae, Candida milleri and Lactobacillus sanfranciscensis during manufacture of two traditional sourdough baked goods

(2012) Manuel Venturi et al.   FOOD MICROBIOLOGY

Distinct differentiation of closely related species of Bacillus subtilis group with industrial importance

(2011) Kumaraswamy Jeyaram et al.   JOURNAL OF MICROBIOLOGICAL METHODS

Discrimination of probiotic Lactobacillus strains for poultry by repetitive sequenced-based PCR fingerprinting

(2011) Chin Mei Lee et al.   JOURNAL OF THE SCIENCE OF FOOD AND AGRICULTURE

The dnaK gene as a molecular marker for the classification and discrimination of the Lactobacillus casei group

(2010) Chien-Hsun Huang et al.   ANTONIE VAN LEEUWENHOEK INTERNATIONAL JOURNAL OF GENERAL AND MOLECULAR MICROBIOLOGY

Evolution and Function of the Plant Cell Wall Synthesis-Related Glycosyltransferase Family 8

(2010) Y. Yin et al.   PLANT PHYSIOLOGY

The type strain of Lactobacillus casei is ATCC 393, ATCC 334 cannot serve as the type because it represents a different taxon, the name Lactobacillus paracasei and its subspecies names are not rejected and the revival of the name 'Lactobacillus zeae' contravenes Rules 51b (1) and (2) of the International Code of Nomenclature of Bacteria. Opinion 82

(2008)   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY