Effect of Fungicide Application on Lowbush Blueberries Soil Microbiome

Genesis and Gappa: processing, analyzing and visualizing phylogenetic (placement) data

(2020) Lucas Czech et al.   BIOINFORMATICS

PICRUSt2 for prediction of metagenome functions

(2020) Gavin M. Douglas et al.   NATURE BIOTECHNOLOGY

Chlorothalonil tolerance of indole producing bacteria associated to wheat (Triticum turgidum L.) rhizosphere in the Yaqui Valley, Mexico

(2019) Alondra M. Díaz Rodríguez et al.   ECOTOXICOLOGY

Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2

(2019) Evan Bolyen et al.   NATURE BIOTECHNOLOGY

Lowbush blueberry fruit yield and growth response to inorganic and organic N-fertilization when competing with two common weed species

(2019) Charles Marty et al.   PLoS One

The impact of storage conditions on human stool 16S rRNA microbiome composition and diversity

(2019) Lauren V. Carruthers et al.   PeerJ

Evolutionary history of mycorrhizal symbioses and global host plant diversity

(2018) Mark C. Brundrett et al.   NEW PHYTOLOGIST

Optimizing taxonomic classification of marker-gene amplicon sequences with QIIME 2’s q2-feature-classifier plugin

(2018) Nicholas A. Bokulich et al.   Microbiome

The influence of chlorothalonil on the activity of soil microorganisms and enzymes

(2018) Małgorzata Baćmaga et al.   ECOTOXICOLOGY

EPA-ng: Massively Parallel Evolutionary Placement of Genetic Sequences

(2018) Pierre Barbera et al.   SYSTEMATIC BIOLOGY

Diversity and characteristics of colonization of root-associated fungi of Vaccinium uliginosum

(2018) Hongyi Yang et al.   Scientific Reports

Residue and intake risk assessment of prothioconazole and its metabolite prothioconazole-desthio in wheat field

(2017) HongFang Lin et al.   ENVIRONMENTAL MONITORING AND ASSESSMENT

Deciphering Diversity Indices for a Better Understanding of Microbial Communities

(2017) Bo-Ra Kim et al.   JOURNAL OF MICROBIOLOGY AND BIOTECHNOLOGY

Towards standards for human fecal sample processing in metagenomic studies

(2017) Paul I Costea et al.   NATURE BIOTECHNOLOGY

Microbiome Helper: a Custom and Streamlined Workflow for Microbiome Research

(2017) André M. Comeau et al.   mSystems

Displaying Variation in Large Datasets: Plotting a Visual Summary of Effect Sizes

(2016) Gregory B. Gloor et al.   JOURNAL OF COMPUTATIONAL AND GRAPHICAL STATISTICS

VSEARCH: a versatile open source tool for metagenomics

(2016) Torbjørn Rognes et al.   PeerJ

Use of 16S rRNA Gene for Identification of a Broad Range of Clinically Relevant Bacterial Pathogens

(2015) Ramya Srinivasan et al.   PLoS One

STAMP: statistical analysis of taxonomic and functional profiles

(2014) Donovan H. Parks et al.   BIOINFORMATICS

Unifying the analysis of high-throughput sequencing datasets: characterizing RNA-seq, 16S rRNA gene sequencing and selective growth experiments by compositional data analysis

(2014) Andrew D Fernandes et al.   Microbiome

ITS1 versus ITS2 as DNA metabarcodes for fungi

(2013) R. Blaalid et al.   Molecular Ecology Resources

ANOVA-Like Differential Expression (ALDEx) Analysis for Mixed Population RNA-Seq

(2013) Andrew D. Fernandes et al.   PLoS One

Prothioconazole and Prothioconazole-Desthio Activities against Candida albicans Sterol 14-α-Demethylase

(2012) Josie E. Parker et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Accumulation of chlorothalonil successively applied to soil and its effect on microbial activity in soil

(2012) Xiangwei Wu et al.   ECOTOXICOLOGY AND ENVIRONMENTAL SAFETY

The SILVA ribosomal RNA gene database project: improved data processing and web-based tools

(2012) Christian Quast et al.   NUCLEIC ACIDS RESEARCH

Investigating Potential Water Quality Impacts of Fungicides Used to Combat Soybean Rust in Indiana

(2009) Debjani Deb et al.   WATER AIR AND SOIL POLLUTION

A Parsimony Approach to Biological Pathway Reconstruction/Inference for Genomes and Metagenomes

(2009) Yuzhen Ye et al.   PLoS Computational Biology