Transcriptomics and Metabolomics Reveal Purine and Phenylpropanoid Metabolism Response to Drought Stress in Dendrobium sinense, an Endemic Orchid Species in Hainan Island

Glucose-regulated HLP1 acts as a key molecule in governing thermomemory

(2019) Mohan Sharma et al.   PLANT PHYSIOLOGY

Transcript and metabolic adjustments triggered by drought in Ilex paraguariensis leaves

(2019) Raúl M. Acevedo et al.   PLANTA

Transcriptome analysis and codominant markers development in caper, a drought tolerant orphan crop with medicinal value

(2019) Francesco Mercati et al.   Scientific Reports

De novo transcriptome assembly and co-expression network analysis of Cynanchum thesioides: Identification of genes involved in resistance to drought stress

(2019) Xiaoyan Zhang et al.   GENE

Coumarin-Induced Delay of Rice Seed Germination Is Mediated by Suppression of Abscisic Acid Catabolism and Reactive Oxygen Species Production

(2019) Bing-Xian Chen et al.   Frontiers in Plant Science

Transcriptomic Analysis Reveals the Temporal and Spatial Changes in Physiological Process and Gene Expression in Common Buckwheat (Fagopyrum esculentum Moench) Grown under Drought Stress

(2019) Hou et al.   Agronomy-Basel

Drought Stress Effects on Growth, ROS Markers, Compatible Solutes, Phenolics, Flavonoids, and Antioxidant Activity in Amaranthus tricolor

(2018) Umakanta Sarker et al.   APPLIED BIOCHEMISTRY AND BIOTECHNOLOGY

MetaboAnalystR: an R package for flexible and reproducible analysis of metabolomics data

(2018) Jasmine Chong et al.   BIOINFORMATICS

Wheat CBL-interacting protein kinase 23 positively regulates drought stress and ABA responses

(2018) Xiao-Yu Cui et al.   BMC PLANT BIOLOGY

Overexpression of OsTF1L, a rice HD-Zip transcription factor, promotes lignin biosynthesis and stomatal closure that improves drought tolerance

(2018) Seung Woon Bang et al.   PLANT BIOTECHNOLOGY JOURNAL

Isoform Sequencing and State-of-Art Applications for Unravelling Complexity of Plant Transcriptomes

(2018) Dong An et al.   Genes

Analysis of Dendrobium huoshanense transcriptome unveils putative genes associated with active ingredients synthesis

(2018) Yingdan Yuan et al.   BMC GENOMICS

Enriched networks ‘nucleoside/nucleotide and ribonucleoside/ribonucleotide metabolic processes’ and ‘response to stimulus’ potentially conferred to drought adaptation of the epiphytic orchid Dendrobium wangliangii

(2018) Dake Zhao et al.   PHYSIOLOGY AND MOLECULAR BIOLOGY OF PLANTS

Is thinning an alternative when trees could die in response to drought? The case of planted Pinus nigra and P. Sylvestris stands in southern Spain

(2018) Rafael M. Navarro-Cerrillo et al.   FOREST ECOLOGY AND MANAGEMENT

Transcriptome sequencing and development of novel genic SSR markers for Dendrobium officinale

(2017) Meng Xu et al.   MOLECULAR BREEDING

BPM-CUL3 E3 ligase modulates thermotolerance by facilitating negative regulatory domain-mediated degradation of DREB2A inArabidopsis

(2017) Kyoko Morimoto et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Hybrid Sequencing of Full-Length cDNA Transcripts of Stems and Leaves in Dendrobium officinale

(2017) Liu He et al.   Genes

Improve homology search sensitivity of PacBio data by correcting frameshifts

(2016) Nan Du et al.   BIOINFORMATICS

Abiotic Stress Signaling and Responses in Plants

(2016) Jian-Kang Zhu   CELL

Drought stress and re-watering increase secondary metabolites and enzyme activity in dendrobium moniliforme

(2016) Xiaolu Wu et al.   INDUSTRIAL CROPS AND PRODUCTS

Divergent Adaptive Strategies by Two Co-occurring Epiphytic Orchids to Water Stress: Escape or Avoidance?

(2016) Wei Zhang et al.   Frontiers in Plant Science

Transcription Factors and Plants Response to Drought Stress: Current Understanding and Future Directions

(2016) Rohit Joshi et al.   Frontiers in Plant Science

Transcript profiling analysis reveals crucial genes regulating main metabolism during adventitious root formation in cuttings of Morus alba L.

(2015) XiaoLong Du et al.   PLANT GROWTH REGULATION

Physiological and Comparative Proteomic Analysis Reveals Different Drought Responses in Roots and Leaves of Drought-Tolerant Wild Wheat (Triticum boeoticum)

(2015) Hui Liu et al.   PLoS One

Co-transforming bar and CsALDH Genes Enhanced Resistance to Herbicide and Drought and Salt Stress in Transgenic Alfalfa (Medicago sativa L.)

(2015) Zhen Duan et al.   Frontiers in Plant Science

Transcriptional regulation of drought response: a tortuous network of transcriptional factors

(2015) Dhriti Singh et al.   Frontiers in Plant Science

LoRDEC: accurate and efficient long read error correction

(2014) Leena Salmela et al.   BIOINFORMATICS

Reconstructing complex regions of genomes using long-read sequencing technology

(2014) J. Huddleston et al.   GENOME RESEARCH

Differential Transcriptomic Analysis by RNA-Seq of GSNO-Responsive Genes Between Arabidopsis Roots and Leaves

(2014) Juan C. Begara-Morales et al.   PLANT AND CELL PHYSIOLOGY

Arabidopsis xanthine dehydrogenase mutants defective in purine degradation show a compromised protective response to drought and oxidative stress

(2014) Shunsuke Watanabe et al.   Plant Biotechnology

Correlated evolution in traits influencing leaf water balance in Dendrobium (Orchidaceae)

(2014) Mei Sun et al.   PLANT ECOLOGY

Integrated Analysis of the Effects of Cold and Dehydration on Rice Metabolites, Phytohormones, and Gene Transcripts

(2014) K. Maruyama et al.   PLANT PHYSIOLOGY

The role of the F-box gene TaFBA1 from wheat ( Triticum aestivum L.) in drought tolerance

(2014) Shumei Zhou et al.   PLANT PHYSIOLOGY AND BIOCHEMISTRY

Jasmonates: biosynthesis, perception, signal transduction and action in plant stress response, growth and development. An update to the 2007 review in Annals of Botany

(2013) C. Wasternack et al.   ANNALS OF BOTANY

Identification of differentially-expressed genes potentially implicated in drought response in pitaya (Hylocereus undatus) by suppression subtractive hybridization and cDNA microarray analysis

(2013) Qing-Jie Fan et al.   GENE

A Novel Integrated Method for Large-Scale Detection, Identification, and Quantification of Widely Targeted Metabolites: Application in the Study of Rice Metabolomics

(2013) Wei Chen et al.   Molecular Plant

A single-molecule long-read survey of the human transcriptome

(2013) Donald Sharon et al.   NATURE BIOTECHNOLOGY

The Agony of Choice: How Plants Balance Growth and Survival under Water-Limiting Conditions

(2013) H. Claeys et al.   PLANT PHYSIOLOGY

CD-HIT: accelerated for clustering the next-generation sequencing data

(2012) Limin Fu et al.   BIOINFORMATICS

Transcript profiling of cytokinin action in Arabidopsis roots and shoots discovers largely similar but also organ-specific responses

(2012) Wolfram G Brenner et al.   BMC PLANT BIOLOGY

Transcriptomic analysis of oxylipin biosynthesis genes and chemical profiling reveal an early induction of jasmonates in chickpea roots under drought stress

(2012) Stefania De Domenico et al.   PLANT PHYSIOLOGY AND BIOCHEMISTRY

RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome

(2011) Bo Li et al.   BMC BIOINFORMATICS

Full-length transcriptome assembly from RNA-Seq data without a reference genome

(2011) Manfred G Grabherr et al.   NATURE BIOTECHNOLOGY

Advancing RNA-Seq analysis

(2010) Brian J Haas et al.   NATURE BIOTECHNOLOGY

Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation

(2010) Cole Trapnell et al.   NATURE BIOTECHNOLOGY

Metabolic Pathways Involved in Cold Acclimation Identified by Integrated Analysis of Metabolites and Transcripts Regulated by DREB1A and DREB2A

(2009) K. Maruyama et al.   PLANT PHYSIOLOGY