Mitochondrion-to-Chloroplast DNA Transfers and Intragenomic Proliferation of Chloroplast Group II Introns inGloeotilopsisGreen Algae (Ulotrichales, Ulvophyceae)

Variable presence of the inverted repeat and plastome stability inErodium

(2016) John C. Blazier et al.   ANNALS OF BOTANY

Distinctive Architecture of the Chloroplast Genome in the Chlorodendrophycean Green Algae Scherffelia dubia and Tetraselmis sp. CCMP 881

(2016) Monique Turmel et al.   PLoS One

Comparative Chloroplast Genome Analyses of Streptophyte Green Algae Uncover Major Structural Alterations in the Klebsormidiophyceae, Coleochaetophyceae and Zygnematophyceae

(2016) Claude Lemieux et al.   Frontiers in Plant Science

Complete mitochondrial genome of Ulva prolifera, the dominant species of green macroalgal blooms in Yellow Sea, China

(2016) Lingjie Zhou et al.   Mitochondrial DNA Part B-Resources

Complete mitochondrial genome of Ulva linza, one of the causal species of green macroalgal blooms in Yellow Sea, China

(2016) Lingjie Zhou et al.   Mitochondrial DNA Part B-Resources

Chloroplast Phylogenomic Inference of Green Algae Relationships

(2016) Linhua Sun et al.   Scientific Reports

The chloroplast genomes of Bryopsis plumosa and Tydemania expeditiones (Bryopsidales, Chlorophyta): compact genomes and genes of bacterial origin

(2015) Frederik Leliaert et al.   BMC GENOMICS

Dynamic Evolution of the Chloroplast Genome in the Green Algal Classes Pedinophyceae and Trebouxiophyceae

(2015) Monique Turmel et al.   Genome Biology and Evolution

Chloroplast Genome Evolution in the Euglenaceae

(2015) Matthew S. Bennett et al.   JOURNAL OF EUKARYOTIC MICROBIOLOGY

Evolution of group II introns

(2015) Steven Zimmerly et al.   Mobile DNA

Recent mobility of plastid encoded group II introns and twintrons in five strains of the unicellular red algaPorphyridium

(2015) Marie-Mathilde Perrineau et al.   PeerJ

The chloroplast genome of the marine green macroalga Ulva fasciata Delile (Ulvophyceae, Chlorophyta)

(2015) James T. Melton et al.   Mitochondrial DNA Part A

De novoassembly of the mitochondrial genome ofUlva fasciataDelile (Ulvophyceae, Chlorophyta), a distromatic blade-forming green macroalga

(2015) James Theodore Melton et al.   Mitochondrial DNA Part A

The Complete Chloroplast and Mitochondrial Genomes of the Green Macroalga Ulva sp. UNA00071828 (Ulvophyceae, Chlorophyta)

(2015) James T. Melton et al.   PLoS One

RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies

(2014) Alexandros Stamatakis   BIOINFORMATICS

Six newly sequenced chloroplast genomes from prasinophyte green algae provide insights into the relationships among prasinophyte lineages and the diversity of streamlined genome architecture in picoplanktonic species

(2014) Claude Lemieux et al.   BMC GENOMICS

Mitochondrion-to-plastid DNA transfer: it happens

(2014) David Roy Smith   NEW PHYTOLOGIST

Widespread occurrence of organelle genome-encoded 5S rRNAs including permuted molecules

(2014) Matus Valach et al.   NUCLEIC ACIDS RESEARCH

Horizontal Transfer of DNA from the Mitochondrial to the Plastid Genome and Its Subsequent Evolution in Milkweeds (Apocynaceae)

(2013) Shannon C.K. Straub et al.   Genome Biology and Evolution

Evidence for Transitional Stages in the Evolution of Euglenid Group II Introns and Twintrons in the Monomorphina aenigmatica Plastid Genome

(2013) Jean-François Pombert et al.   PLoS One

A curious occurrence of Hazenia broadyi spec. nova in Antarctica and the review of the genus Hazenia (Ulotrichales, Chlorophyceae)

(2013) Pavel Škaloud et al.   POLAR BIOLOGY

De novo assembly of the carrot mitochondrial genome using next generation sequencing of whole genomic DNA provides first evidence of DNA transfer into an angiosperm plastid genome

(2012) Massimo Iorizzo et al.   BMC PLANT BIOLOGY

Phylogeny and Molecular Evolution of the Green Algae

(2012) Frederik Leliaert et al.   CRITICAL REVIEWS IN PLANT SCIENCES

The Mitochondrial LSU rRNA Group II Intron of Ustilago maydis Encodes an Active Homing Endonuclease Likely Involved in Intron Mobility

(2012) Anja Pfeifer et al.   PLoS One

Multiple self-splicing introns in the 16S rRNA genes of giant sulfur bacteria

(2012) V. Salman et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Quality control and preprocessing of metagenomic datasets

(2011) R. Schmieder et al.   BIOINFORMATICS

FLASH: fast length adjustment of short reads to improve genome assemblies

(2011) T. Magoc et al.   BIOINFORMATICS

Extending the Limited Transfer Window Hypothesis to Inter-organelle DNA Migration

(2011) David Roy Smith   Genome Biology and Evolution

The Bryopsis hypnoides Plastid Genome: Multimeric Forms and Complete Nucleotide Sequence

(2011) Fang Lü et al.   PLoS One

Detection of gene pathways with predictive power for breast cancer prognosis

(2010) Shuangge Ma et al.   BMC BIOINFORMATICS

The Dunaliella salina organelle genomes: large sequences, inflated with intronic and intergenic DNA

(2010) David Smith et al.   BMC PLANT BIOLOGY

Ray: Simultaneous Assembly of Reads from a Mix of High-Throughput Sequencing Technologies

(2010) Sébastien Boisvert et al.   JOURNAL OF COMPUTATIONAL BIOLOGY

Remarkable Abundance and Evolution of Mobile Group II Introns in Wolbachia Bacterial Endosymbionts

(2010) S. Leclercq et al.   MOLECULAR BIOLOGY AND EVOLUTION

Evolution and Cytological Diversification of the Green Seaweeds (Ulvophyceae)

(2010) E. Cocquyt et al.   MOLECULAR BIOLOGY AND EVOLUTION

Extreme Reconfiguration of Plastid Genomes in the Angiosperm Family Geraniaceae: Rearrangements, Repeats, and Codon Usage

(2010) M. M. Guisinger et al.   MOLECULAR BIOLOGY AND EVOLUTION

A group II intron encodes a functional LAGLIDADG homing endonuclease and self-splices under moderate temperature and ionic conditions

(2010) S.-T. Mullineux et al.   RNA

Mechanisms Used for Genomic Proliferation by Thermophilic Group II Introns

(2010) Georg Mohr et al.   PLOS BIOLOGY

The Cryphonectria parasitica mitochondrial rns gene: Plasmid-like elements, introns and homing endonucleases

(2009) Claudia B. Monteiro-Vitorello et al.   FUNGAL GENETICS AND BIOLOGY

The give-and-take of DNA: horizontal gene transfer in plants

(2009) Ralph Bock   TRENDS IN PLANT SCIENCE

Dynamics and evolution of the inverted repeat-large single copy junctions in the chloroplast genomes of monocots

(2008) Rui-Jiang Wang et al.   BMC EVOLUTIONARY BIOLOGY

Chloroplast DNA sequence of the green alga Oedogonium cardiacum (Chlorophyceae): Unique genome architecture, derived characters shared with the Chaetophorales and novel genes acquired through horizontal transfer

(2008) Jean-Simon Brouard et al.   BMC GENOMICS

Mitochondrial DNA of Vitis vinifera and the Issue of Rampant Horizontal Gene Transfer

(2008) V. V. Goremykin et al.   MOLECULAR BIOLOGY AND EVOLUTION

Retrotransposition of the Ll.LtrB group II intron proceeds predominantly via reverse splicing into DNA targets

(2003) Kenji Ichiyanagi et al.   MOLECULAR MICROBIOLOGY