Comparative Chloroplast Genome Analyses of Streptophyte Green Algae Uncover Major Structural Alterations in the Klebsormidiophyceae, Coleochaetophyceae and Zygnematophyceae

Coevolution between Nuclear-Encoded DNA Replication, Recombination, and Repair Genes and Plastid Genome Complexity

(2016) Jin Zhang et al.   Genome Biology and Evolution

Distinctive Architecture of the Chloroplast Genome in the Chlorodendrophycean Green Algae Scherffelia dubia and Tetraselmis sp. CCMP 881

(2016) Monique Turmel et al.   PLoS One

The chloroplast genomes of Bryopsis plumosa and Tydemania expeditiones (Bryopsidales, Chlorophyta): compact genomes and genes of bacterial origin

(2015) Frederik Leliaert et al.   BMC GENOMICS

Dynamic Evolution of the Chloroplast Genome in the Green Algal Classes Pedinophyceae and Trebouxiophyceae

(2015) Monique Turmel et al.   Genome Biology and Evolution

The Complete Chloroplast and Mitochondrial Genomes of the Green Macroalga Ulva sp. UNA00071828 (Ulvophyceae, Chlorophyta)

(2015) James T. Melton et al.   PLoS One

RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies

(2014) Alexandros Stamatakis   BIOINFORMATICS

MLGO: phylogeny reconstruction and ancestral inference from gene-order data

(2014) Fei Hu et al.   BMC BIOINFORMATICS

Six newly sequenced chloroplast genomes from prasinophyte green algae provide insights into the relationships among prasinophyte lineages and the diversity of streamlined genome architecture in picoplanktonic species

(2014) Claude Lemieux et al.   BMC GENOMICS

Analyses of Charophyte Chloroplast Genomes Help Characterize the Ancestral Chloroplast Genome of Land Plants

(2014) Peter Civáň et al.   Genome Biology and Evolution

Phylotranscriptomic analysis of the origin and early diversification of land plants

(2014) Norman J. Wickett et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Conflicting Phylogenies for Early Land Plants are Caused by Composition Biases among Synonymous Substitutions

(2014) Cymon J. Cox et al.   SYSTEMATIC BIOLOGY

Green Algae and the Origins of Multicellularity in the Plant Kingdom

(2014) J. G. Umen   Cold Spring Harbor Perspectives in Biology

Direct interaction of FtsZ and MreB is required for septum synthesis and cell division in Escherichia coli

(2013) Andrew K Fenton et al.   EMBO JOURNAL

Tracing the Evolution of Streptophyte Algae and Their Mitochondrial Genome

(2013) Monique Turmel et al.   Genome Biology and Evolution

Reconstruction of the Ancestral Plastid Genome in Geraniaceae Reveals a Correlation between Genome Rearrangements, Repeats, and Nucleotide Substitution Rates

(2013) Mao-Lun Weng et al.   MOLECULAR BIOLOGY AND EVOLUTION

Streptophyte Algae and the Origin of Land Plants Revisited Using Heterogeneous Models with Three New Algal Chloroplast Genomes

(2013) Bojian Zhong et al.   MOLECULAR BIOLOGY AND EVOLUTION

DAMBE5: A Comprehensive Software Package for Data Analysis in Molecular Biology and Evolution

(2013) Xuhua Xia   MOLECULAR BIOLOGY AND EVOLUTION

Origin of land plants using the multispecies coalescent model

(2013) Bojian Zhong et al.   TRENDS IN PLANT SCIENCE

Parameters for accurate genome alignment

(2012) Martin C Frith et al.   BMC BIOINFORMATICS

Phylogeny and Molecular Evolution of the Green Algae

(2012) Frederik Leliaert et al.   CRITICAL REVIEWS IN PLANT SCIENCES

Origin of land plants revisited in the light of sequence contamination and missing data

(2012) Simon Laurin-Lemay et al.   CURRENT BIOLOGY

A timeline for terrestrialization: consequences for the carbon cycle in the Palaeozoic

(2012) P. Kenrick et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Broad Phylogenomic Sampling and the Sister Lineage of Land Plants

(2012) Ruth E. Timme et al.   PLoS One

Snow ball earth and the split of Streptophyta and Chlorophyta

(2012) Burkhard Becker   TRENDS IN PLANT SCIENCE

Origin of land plants: Do conjugating green algae hold the key?

(2011) Sabina Wodniok et al.   BMC EVOLUTIONARY BIOLOGY

The Chloroplast Genome of the Green Alga Schizomeris leibleinii (Chlorophyceae) Provides Evidence for Bidirectional DNA Replication from a Single Origin in the Chaetophorales

(2011) Jean-Simon Brouard et al.   Genome Biology and Evolution

The Role of Reverse Transcriptase in Intron Gain and Loss Mechanisms

(2011) Noa E. Cohen et al.   MOLECULAR BIOLOGY AND EVOLUTION

The evolution of the plastid chromosome in land plants: gene content, gene order, gene function

(2011) Susann Wicke et al.   PLANT MOLECULAR BIOLOGY

The Bryopsis hypnoides Plastid Genome: Multimeric Forms and Complete Nucleotide Sequence

(2011) Fang Lü et al.   PLoS One

Datamonkey 2010: a suite of phylogenetic analysis tools for evolutionary biology

(2010) W. Delport et al.   BIOINFORMATICS

The Exceptionally Large Chloroplast Genome of the Green Alga Floydiella terrestris Illuminates the Evolutionary History of the Chlorophyceae

(2010) J. S. Brouard et al.   Genome Biology and Evolution

Ray: Simultaneous Assembly of Reads from a Mix of High-Throughput Sequencing Technologies

(2010) Sébastien Boisvert et al.   JOURNAL OF COMPUTATIONAL BIOLOGY

Bacterial translation elongation factor EF-Tu interacts and colocalizes with actin-like MreB protein

(2010) H. J. Defeu Soufo et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Streptophyte algae and the origin of embryophytes

(2009) Burkhard Becker et al.   ANNALS OF BOTANY

trimAl: a tool for automated alignment trimming in large-scale phylogenetic analyses

(2009) S. Capella-Gutierrez et al.   BIOINFORMATICS

PhyloBayes 3: a Bayesian software package for phylogenetic reconstruction and molecular dating

(2009) Nicolas Lartillot et al.   BIOINFORMATICS

The Earliest Land Plants

(2008) Patricia G. Gensel   Annual Review of Ecology Evolution and Systematics

Phyutility: a phyloinformatics tool for trees, alignments and molecular data

(2008) S. A. Smith et al.   BIOINFORMATICS

Chloroplast DNA sequence of the green alga Oedogonium cardiacum (Chlorophyceae): Unique genome architecture, derived characters shared with the Chaetophorales and novel genes acquired through horizontal transfer

(2008) Jean-Simon Brouard et al.   BMC GENOMICS

NEW STREPTOPHYTE GREEN ALGAE FROM TERRESTRIAL HABITATS AND AN ASSESSMENT OF THE GENUSINTERFILUM(KLEBSORMIDIOPHYCEAE, STREPTOPHYTA)1

(2008) Tatiana I. Mikhailyuk et al.   JOURNAL OF PHYCOLOGY

PHYLOGENY OF THE CONJUGATING GREEN ALGAE BASED ON CHLOROPLAST AND MITOCHONDRIAL NUCLEOTIDE SEQUENCE DATA

(2008) John D. Hall et al.   JOURNAL OF PHYCOLOGY

The Chloroplast Genomes of the Green Algae Pyramimonas, Monomastix, and Pycnococcus Shed New light on the Evolutionary History of Prasinophytes and the Origin of the Secondary Chloroplasts of Euglenids

(2008) Monique Turmel et al.   MOLECULAR BIOLOGY AND EVOLUTION