Single-cell and single-nucleus RNA-seq uncovers shared and distinct axes of variation in dorsal LGN neurons in mice, non-human primates, and humans

Spatially resolved transcriptomics in neuroscience

(2021) Jennie L. Close et al.   NATURE METHODS

Dual midbrain and forebrain origins of thalamic inhibitory interneurons

(2021) Polona Jager et al.   eLife

The Allen Mouse Brain Common Coordinate Framework: A 3D Reference Atlas

(2020) Quanxin Wang et al.   CELL

Extraction of Distinct Neuronal Cell Types from within a Genetically Continuous Population

(2020) Euiseok J. Kim et al.   NEURON

Innovations present in the primate interneuron repertoire

(2020) Fenna M. Krienen et al.   NATURE

Cell type‐ and layer‐specific convergence in core and shell neurons of the dorsal lateral geniculate nucleus

(2020) Sayumi Okigawa et al.   JOURNAL OF COMPARATIVE NEUROLOGY

Regional, Layer, and Cell-Type-Specific Connectivity of the Mouse Default Mode Network

(2020) Jennifer D. Whitesell et al.   NEURON

Transcriptional Programs of Circuit Assembly in the Drosophila Visual System

(2020) Yerbol Z. Kurmangaliyev et al.   NEURON

Multimodal Single-Cell Analysis Reveals Physiological Maturation in the Developing Human Neocortex

(2019) Simone Mayer et al.   NEURON

Mouse dLGN Receives Functional Input from a Diverse Population of Retinal Ganglion Cells with Limited Convergence

(2019) Miroslav Román Rosón et al.   NEURON

Molecular Classification and Comparative Taxonomics of Foveal and Peripheral Cells in Primate Retina

(2019) Yi-Rong Peng et al.   CELL

Comprehensive Integration of Single-Cell Data

(2019) Tim Stuart et al.   CELL

Relation of koniocellular layers of dorsal lateral geniculate to inferior pulvinar nuclei in common marmosets

(2019) Bing‐Xing Huo et al.   EUROPEAN JOURNAL OF NEUROSCIENCE

Conserved cell types with divergent features in human versus mouse cortex

(2019) Rebecca D. Hodge et al.   NATURE

A repeated molecular architecture across thalamic pathways

(2019) James W. Phillips et al.   NATURE NEUROSCIENCE

Batch effects in single-cell RNA-sequencing data are corrected by matching mutual nearest neighbors

(2018) Laleh Haghverdi et al.   NATURE BIOTECHNOLOGY

Integrating single-cell transcriptomic data across different conditions, technologies, and species

(2018) Andrew Butler et al.   NATURE BIOTECHNOLOGY

Visual Experience-Dependent Expression of Fn14 Is Required for Retinogeniculate Refinement

(2018) Lucas Cheadle et al.   NEURON

Single-cell transcriptomics of the developing lateral geniculate nucleus reveals insights into circuit assembly and refinement

(2018) Brian T. Kalish et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Molecular Diversity and Specializations among the Cells of the Adult Mouse Brain

(2018) Arpiar Saunders et al.   CELL

Molecular Architecture of the Mouse Nervous System

(2018) Amit Zeisel et al.   CELL

Shared and distinct transcriptomic cell types across neocortical areas

(2018) Bosiljka Tasic et al.   NATURE

Single-nucleus and single-cell transcriptomes compared in matched cortical cell types

(2018) Trygve E. Bakken et al.   PLoS One

The evolution and functions of nuclei of the visual pulvinar in primates

(2017) Mary K.L. Baldwin et al.   JOURNAL OF COMPARATIVE NEUROLOGY

The promise of spatial transcriptomics for neuroscience in the era of molecular cell typing

(2017) Ed Lein et al.   SCIENCE

Molecular Diversity of Midbrain Development in Mouse, Human, and Stem Cells

(2016) Gioele La Manno et al.   CELL

Adult mouse cortical cell taxonomy revealed by single cell transcriptomics

(2016) Bosiljka Tasic et al.   NATURE NEUROSCIENCE

Tectal-derived interneurons contribute to phasic and tonic inhibition in the visual thalamus

(2016) Polona Jager et al.   Nature Communications

Two types of interneurons in the mouse lateral geniculate nucleus are characterized by different h-current density

(2016) Michael Leist et al.   Scientific Reports

Retinal and Tectal "Driver-Like" Inputs Converge in the Shell of the Mouse Dorsal Lateral Geniculate Nucleus

(2015) M. E. Bickford et al.   JOURNAL OF NEUROSCIENCE

Integration of electrophysiological recordings with single-cell RNA-seq data identifies neuronal subtypes

(2015) János Fuzik et al.   NATURE BIOTECHNOLOGY

Electrophysiological, transcriptomic and morphologic profiling of single neurons using Patch-seq

(2015) Cathryn R Cadwell et al.   NATURE BIOTECHNOLOGY

Attention alters orientation processing in the human lateral geniculate nucleus

(2015) Sam Ling et al.   NATURE NEUROSCIENCE

A survey of human brain transcriptome diversity at the single cell level

(2015) Spyros Darmanis et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Cell types in the mouse cortex and hippocampus revealed by single-cell RNA-seq

(2015) A. Zeisel et al.   SCIENCE

A dedicated circuit links direction-selective retinal ganglion cells to the primary visual cortex

(2014) Alberto Cruz-Martín et al.   NATURE

Transcriptional control of GABAergic neuronal subtype identity in the thalamus

(2014) Katherine Sellers et al.   Neural Development

Retinal Input Directs the Recruitment of Inhibitory Interneurons into Thalamic Visual Circuits

(2014) Bruno Golding et al.   NEURON

Anatomical characterization of Cre driver mice for neural circuit mapping and manipulation

(2014) Julie A. Harris et al.   Frontiers in Neural Circuits

Mapping the primate lateral geniculate nucleus: A review of experiments and methods

(2013) Ailsa M. Jeffries et al.   JOURNAL OF PHYSIOLOGY-PARIS

STAR: ultrafast universal RNA-seq aligner

(2012) Alexander Dobin et al.   BIOINFORMATICS

FoxP2 is a Parvocellular-Specific Transcription Factor in the Visual Thalamus of Monkeys and Ferrets

(2012) L. Iwai et al.   CEREBRAL CORTEX

Morphologically Distinct Classes of Relay Cells Exhibit Regional Preferences in the Dorsal Lateral Geniculate Nucleus of the Mouse

(2011) T. E. Krahe et al.   JOURNAL OF NEUROSCIENCE

Cognitive and Perceptual Functions of the Visual Thalamus

(2011) Yuri B. Saalmann et al.   NEURON

Leptin Action on GABAergic Neurons Prevents Obesity and Reduces Inhibitory Tone to POMC Neurons

(2011) Linh Vong et al.   NEURON

A Resource of Cre Driver Lines for Genetic Targeting of GABAergic Neurons in Cerebral Cortex

(2011) Hiroki Taniguchi et al.   NEURON

What can mice tell us about how vision works?

(2011) Andrew D. Huberman et al.   TRENDS IN NEUROSCIENCES

Modernizing Reference Genome Assemblies

(2011) Deanna M. Church et al.   PLOS BIOLOGY

Building a bridal chamber: development of the thalamus

(2010) Steffen Scholpp et al.   TRENDS IN NEUROSCIENCES

A robust and high-throughput Cre reporting and characterization system for the whole mouse brain

(2009) Linda Madisen et al.   NATURE NEUROSCIENCE

Molecular Correlates of Laminar Differences in the Macaque Dorsal Lateral Geniculate Nucleus

(2008) K. D. Murray et al.   JOURNAL OF NEUROSCIENCE

Synaptic release of GABA by AgRP neurons is required for normal regulation of energy balance

(2008) Qingchun Tong et al.   NATURE NEUROSCIENCE