Regional, Layer, and Cell-Type-Specific Connectivity of the Mouse Default Mode Network

The Allen Mouse Brain Common Coordinate Framework: A 3D Reference Atlas

(2020) Quanxin Wang et al.   CELL

Extraction of Distinct Neuronal Cell Types from within a Genetically Continuous Population

(2020) Euiseok J. Kim et al.   NEURON

A blueprint of mammalian cortical connectomes

(2019) Alexandros Goulas et al.   PLOS BIOLOGY

Connectional architecture of a mouse hypothalamic circuit node controlling social behavior

(2019) Liching Lo et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Parallel distributed networks resolved at high resolution reveal close juxtaposition of distinct regions

(2019) Rodrigo M. Braga et al.   JOURNAL OF NEUROPHYSIOLOGY

Infraslow State Fluctuations Govern Spontaneous fMRI Network Dynamics

(2019) Daniel Gutierrez-Barragan et al.   CURRENT BIOLOGY

Classification of electrophysiological and morphological neuron types in the mouse visual cortex

(2019) Nathan W. Gouwens et al.   NATURE NEUROSCIENCE

Macroscale cortical organization and a default-like apex transmodal network in the marmoset monkey

(2019) Randy L. Buckner et al.   Nature Communications

Reconstruction of 1,000 Projection Neurons Reveals New Cell Types and Organization of Long-Range Connectivity in the Mouse Brain

(2019) Johan Winnubst et al.   CELL

The brain’s default network: updated anatomy, physiology and evolving insights

(2019) Randy L. Buckner et al.   NATURE REVIEWS NEUROSCIENCE

Hierarchical organization of cortical and thalamic connectivity

(2019) Julie A. Harris et al.   NATURE

Common functional networks in the mouse brain revealed by multi-centre resting-state fMRI analysis

(2019) Joanes Grandjean et al.   NEUROIMAGE

Autism-associated 16p11.2 microdeletion impairs prefrontal functional connectivity in mouse and human

(2018) Alice Bertero et al.   BRAIN

A Suite of Transgenic Driver and Reporter Mouse Lines with Enhanced Brain-Cell-Type Targeting and Functionality

(2018) Tanya L. Daigle et al.   CELL

Nontoxic, double-deletion-mutant rabies viral vectors for retrograde targeting of projection neurons

(2018) Soumya Chatterjee et al.   NATURE NEUROSCIENCE

Subsystem organization of axonal connections within and between the right and left cerebral cortex and cerebral nuclei (endbrain)

(2018) Larry W. Swanson et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The logic of single-cell projections from visual cortex

(2018) Yunyun Han et al.   NATURE

Selective vulnerability in neurodegenerative diseases

(2018) Hongjun Fu et al.   NATURE NEUROSCIENCE

Shared and distinct transcriptomic cell types across neocortical areas

(2018) Bosiljka Tasic et al.   NATURE

Structural Basis of Large-Scale Functional Connectivity in the Mouse

(2017) Joanes Grandjean et al.   JOURNAL OF NEUROSCIENCE

Structural and functional, empirical and modeled connectivity in the cerebral cortex of the rat

(2017) Antonio Díaz-Parra et al.   NEUROIMAGE

Parallel Interdigitated Distributed Networks within the Individual Estimated by Intrinsic Functional Connectivity

(2017) Rodrigo M. Braga et al.   NEURON

What constitutes the prefrontal cortex?

(2017) Marie Carlén   SCIENCE

Semi-automated registration-based anatomical labelling, voxel based morphometry and cortical thickness mapping of the mouse brain

(2016) Marco Pagani et al.   JOURNAL OF NEUROSCIENCE METHODS

Adult mouse cortical cell taxonomy revealed by single cell transcriptomics

(2016) Bosiljka Tasic et al.   NATURE NEUROSCIENCE

Large-scale functional connectivity networks in the rodent brain

(2016) Alessandro Gozzi et al.   NEUROIMAGE

Rabies Virus CVS-N2c ΔG Strain Enhances Retrograde Synaptic Transfer and Neuronal Viability

(2016) Thomas R. Reardon et al.   NEURON

A Designer AAV Variant Permits Efficient Retrograde Access to Projection Neurons

(2016) D. Gowanlock R. Tervo et al.   NEURON

Constituents and functional implications of the rat default mode network

(2016) Li-Ming Hsu et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Functional connectivity with the retrosplenial cortex predicts cognitive aging in rats

(2016) Jessica A. Ash et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Situating the default-mode network along a principal gradient of macroscale cortical organization

(2016) Daniel S. Margulies et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Long-range population dynamics of anatomically defined neocortical networks

(2016) Jerry L Chen et al.   eLife

A platform for brain-wide imaging and reconstruction of individual neurons

(2016) Michael N Economo et al.   eLife

The Brain's Default Mode Network

(2015) Marcus E. Raichle   Annual Review of Neuroscience

Cascading network failure across the Alzheimer’s disease spectrum

(2015) David T. Jones et al.   BRAIN

Topological organization of connectivity strength in the rat connectome

(2015) Martijn P. van den Heuvel et al.   Brain Structure & Function

Neuroinformatics of the Allen Mouse Brain Connectivity Atlas

(2015) Leonard Kuan et al.   METHODS

The neocortical circuit: themes and variations

(2015) Kenneth D Harris et al.   NATURE NEUROSCIENCE

Functional connectivity hubs of the mouse brain

(2015) Adam Liska et al.   NEUROIMAGE

Mapping the mouse brain with rs-fMRI: An optimized pipeline for functional network identification

(2015) Valerio Zerbi et al.   NEUROIMAGE

limma powers differential expression analyses for RNA-sequencing and microarray studies

(2015) Matthew E. Ritchie et al.   NUCLEIC ACIDS RESEARCH

Wiring cost and topological participation of the mouse brain connectome

(2015) Mikail Rubinov et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Architecture of the cerebral cortical association connectome underlying cognition

(2015) Mihail Bota et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Neural Networks of the Mouse Neocortex

(2014) Brian Zingg et al.   CELL

A mesoscale connectome of the mouse brain

(2014) Seung Wook Oh et al.   NATURE

Large-scale topology and the default mode network in the mouse connectome

(2014) James M. Stafford et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Anatomical characterization of Cre driver mice for neural circuit mapping and manipulation

(2014) Julie A. Harris et al.   Frontiers in Neural Circuits

The parahippocampal gyrus links the default-mode cortical network with the medial temporal lobe memory system

(2013) Andrew M. Ward et al.   HUMAN BRAIN MAPPING

Anatomy of hierarchy: Feedforward and feedback pathways in macaque visual cortex

(2013) Nikola T. Markov et al.   JOURNAL OF COMPARATIVE NEUROLOGY

An Anatomical Substrate for Integration among Functional Networks in Human Cortex

(2013) M. P. van den Heuvel et al.   JOURNAL OF NEUROSCIENCE

Design and generation of recombinant rabies virus vectors

(2013) Fumitaka Osakada et al.   Nature Protocols

Distributed BOLD and CBV-weighted resting-state networks in the mouse brain

(2013) Francesco Sforazzini et al.   NEUROIMAGE

The structural–functional connectome and the default mode network of the human brain

(2013) Andreas Horn et al.   NEUROIMAGE

GENSAT BAC Cre-Recombinase Driver Lines to Study the Functional Organization of Cerebral Cortical and Basal Ganglia Circuits

(2013) Charles R. Gerfen et al.   NEURON

A Predictive Network Model of Cerebral Cortical Connectivity Based on a Distance Rule

(2013) Mária Ercsey-Ravasz et al.   NEURON

STAR: ultrafast universal RNA-seq aligner

(2012) Alexander Dobin et al.   BIOINFORMATICS

Cytoarchitecture of mouse and rat cingulate cortex with human homologies

(2012) Brent A. Vogt et al.   Brain Structure & Function

A Weighted and Directed Interareal Connectivity Matrix for Macaque Cerebral Cortex

(2012) N. T. Markov et al.   CEREBRAL CORTEX

Rat brains also have a default mode network

(2012) H. Lu et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Monkey in the middle: why non-human primates are needed to bridge the gap in resting-state investigations

(2012) R. Matthew Hutchison et al.   Frontiers in Neuroanatomy

Uncovering Intrinsic Connectional Architecture of Functional Networks in Awake Rat Brain

(2011) Z. Liang et al.   JOURNAL OF NEUROSCIENCE

Default Mode of Brain Function in Monkeys

(2011) D. Mantini et al.   JOURNAL OF NEUROSCIENCE

Functional Connectivity fMRI of the Rodent Brain: Comparison of Functional Connectivity Networks in Rat and Mouse

(2011) Elisabeth Jonckers et al.   PLoS One

Default-Mode-Like Network Activation in Awake Rodents

(2011) Jaymin Upadhyay et al.   PLoS One

Robust Reproducible Resting State Networks in the Awake Rodent Brain

(2011) Lino Becerra et al.   PLoS One

Large-scale brain networks and psychopathology: a unifying triple network model

(2011) Vinod Menon   TRENDS IN COGNITIVE SCIENCES

The Retrosplenial Cortex: Intrinsic Connectivity and Connections with the (Para)Hippocampal Region in the Rat. An Interactive Connectome

(2011) Jørgen Sugar et al.   Frontiers in Neuroinformatics

Functional Networks in the Anesthetized Rat Brain Revealed by Independent Component Analysis of Resting-State fMRI

(2010) R. Matthew Hutchison et al.   JOURNAL OF NEUROPHYSIOLOGY

A reproducible evaluation of ANTs similarity metric performance in brain image registration

(2010) Brian B. Avants et al.   NEUROIMAGE

Functional-Anatomic Fractionation of the Brain's Default Network

(2010) Jessica R. Andrews-Hanna et al.   NEURON

What does the retrosplenial cortex do?

(2009) Seralynne D. Vann et al.   NATURE REVIEWS NEUROSCIENCE

Neurodegenerative Diseases Target Large-Scale Human Brain Networks

(2009) William W. Seeley et al.   NEURON

A Proposal for a Coordinated Effort for the Determination of Brainwide Neuroanatomical Connectivity in Model Organisms at a Mesoscopic Scale

(2009) Jason W. Bohland et al.   PLoS Computational Biology

The Brain's Default Network

(2008) Randy L. Buckner et al.   Annals of the New York Academy of Sciences

Resting-State Functional Connectivity Reflects Structural Connectivity in the Default Mode Network

(2008) M. D. Greicius et al.   CEREBRAL CORTEX

Mapping the Structural Core of Human Cerebral Cortex

(2008) Patric Hagmann et al.   PLOS BIOLOGY