Cortex cis-regulatory switches establish scale colour identity and pattern diversity in Heliconius

Genetic population structure constrains local adaptation in sticklebacks

(2021) Petri Kemppainen et al.   MOLECULAR ECOLOGY

Selective sweeps on novel and introgressed variation shape mimicry loci in a butterfly adaptive radiation

(2020) Markus Moest et al.   PLOS BIOLOGY

The genomics of coloration provides insights into adaptive evolution

(2020) Anna Orteu et al.   NATURE REVIEWS GENETICS

From Patterning Genes to Process: Unraveling the Gene Regulatory Networks That Pattern Heliconius Wings

(2020) W. Owen McMillan et al.   Frontiers in Ecology and Evolution

Mechanisms of Change: A Population-Based Perspective on the Roles of Modularity and Pleiotropy in Diversification

(2020) James J. Lewis et al.   Frontiers in Ecology and Evolution

Many functionally connected loci foster adaptive diversification along a neotropical hybrid zone

(2020) James J. Lewis et al.   Science Advances

Male pheromone composition depends on larval but not adult diet in Heliconius melpomene

(2019) Kathy Darragh et al.   ECOLOGICAL ENTOMOLOGY

The genetic architecture of adaptation: convergence and pleiotropy in Heliconius wing pattern evolution

(2019) Jake Morris et al.   HEREDITY

Recombination rate variation shapes barriers to introgression across butterfly genomes

(2019) Simon H. Martin et al.   PLOS BIOLOGY

Sub‐micrometer insights into the cytoskeletal dynamics and ultrastructural diversity of butterfly wing scales

(2019) Christopher R Day et al.   DEVELOPMENTAL DYNAMICS

Changes throughout a Genetic Network Mask the Contribution of Hox Gene Evolution

(2019) Yang Liu et al.   CURRENT BIOLOGY

The EMBL-EBI search and sequence analysis tools APIs in 2019

(2019) Fábio Madeira et al.   NUCLEIC ACIDS RESEARCH

Conservation and flexibility in the gene regulatory landscape of heliconiine butterfly wings

(2019) Joseph J. Hanly et al.   EvoDevo

Butterfly Mimicry Polymorphisms Highlight Phylogenetic Limits of Gene Reuse in the Evolution of Diverse Adaptations

(2019) Nicholas W VanKuren et al.   MOLECULAR BIOLOGY AND EVOLUTION

Graph-based genome alignment and genotyping with HISAT2 and HISAT-genotype

(2019) Daehwan Kim et al.   NATURE BIOTECHNOLOGY

Chromatin conformation remains stable upon extensive transcriptional changes driven by heat shock

(2019) Judhajeet Ray et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Unravelling the genes forming the wing pattern supergene in the polymorphic butterfly Heliconius numata

(2019) Suzanne V. Saenko et al.   EvoDevo

Genetic convergence of industrial melanism in three geometrid moths

(2019) Arjen E. van't Hof et al.   Biology Letters

Parallel evolution of ancient, pleiotropic enhancers underlies butterfly wing pattern mimicry

(2019) James J. Lewis et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Interplay between Developmental Flexibility and Determinism in the Evolution of Mimetic Heliconius Wing Patterns

(2019) Carolina Concha et al.   CURRENT BIOLOGY

Wing scale ultrastructure underlying convergent and divergent iridescent colours in mimetic Heliconius butterflies

(2018) Andrew J. Parnell et al.   Journal of the Royal Society Interface

Correlated Evolution of Two Copulatory Organs via a Single cis-Regulatory Nucleotide Change

(2018) Olga Nagy et al.   CURRENT BIOLOGY

Aristaless Controls Butterfly Wing Color Variation Used in Mimicry and Mate Choice

(2018) Erica L. Westerman et al.   CURRENT BIOLOGY

Genome-Wide Regulatory Adaptation Shapes Population-Level Genomic Landscapes in Heliconius

(2018) James J Lewis et al.   MOLECULAR BIOLOGY AND EVOLUTION

The genome of an underwater architect, the caddisfly Stenopsyche tienmushanensis Hwang (Insecta: Trichoptera)

(2018) Shiqi Luo et al.   GigaScience

Phenotypic variation in Heliconius erato crosses shows that iridescent structural colour is sex-linked and controlled by multiple genes

(2018) Melanie N. Brien et al.   Interface Focus

Exploring Evolutionary Relationships Across the Genome Using Topology Weighting

(2017) Simon H. Martin et al.   GENETICS

Ultraviolet and yellow reflectance but not fluorescence is important for visual discrimination of conspecifics byHeliconius erato

(2017) Susan D. Finkbeiner et al.   JOURNAL OF EXPERIMENTAL BIOLOGY

Evolution of novel mimicry rings facilitated by adaptive introgression in tropical butterflies

(2017) Juan Enciso-Romero et al.   MOLECULAR ECOLOGY

Macroevolutionary shifts ofWntAfunction potentiate butterfly wing-pattern diversity

(2017) Anyi Mazo-Vargas et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Single master regulatory gene coordinates the evolution and development of butterfly color and iridescence

(2017) Linlin Zhang et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Exploring Evolutionary Relationships Across the Genome Using Topology Weighting

(2017) Simon H. Martin et al.   GENETICS

Complex modular architecture around a simple toolkit of wing pattern genes

(2017) Steven M. Van Belleghem et al.   Nature Ecology & Evolution

Spatial patterns of correlated scale size and scale color in relation to color pattern elements in butterfly wings

(2016) Masaki Iwata et al.   JOURNAL OF INSECT PHYSIOLOGY

Selection of Valid Reference Genes for Reverse Transcription Quantitative PCR Analysis inHeliconius numata(Lepidoptera: Nymphalidae)

(2016) Florence Piron Prunier et al.   JOURNAL OF INSECT SCIENCE

The gene cortex controls mimicry and crypsis in butterflies and moths

(2016) Nicola J. Nadeau et al.   NATURE

The industrial melanism mutation in British peppered moths is a transposable element

(2016) Arjen E. van’t Hof et al.   NATURE

Major Improvements to the Heliconius melpomene Genome Assembly Used to Confirm 10 Chromosome Fusion Events in 6 Million Years of Butterfly Evolution

(2016) John W. Davey et al.   G3-Genes Genomes Genetics

Evolutionary Novelty in a Butterfly Wing Pattern through Enhancer Shuffling

(2016) Richard W. R. Wallbank et al.   PLOS BIOLOGY

Genes controlling mimetic colour pattern variation in butterflies

(2016) Nicola J Nadeau   Current Opinion in Insect Science

Unraveling the Tangled Skein: The Evolution of Transcriptional Regulatory Networks in Development

(2015) Mark Rebeiz et al.   Annual Review of Genomics and Human Genetics

The Functional Basis of Wing Patterning in Heliconius Butterflies: The Molecules Behind Mimicry

(2015) M. R. Kronforst et al.   GENETICS

Conservatism and novelty in the genetic architecture of adaptation in Heliconius butterflies

(2015) B Huber et al.   HEREDITY

Mapping and recombination analysis of two moth colour mutations, Black moth and Wild wing spot, in the silkworm Bombyx mori

(2015) K Ito et al.   HEREDITY

GUIDANCE2: accurate detection of unreliable alignment regions accounting for the uncertainty of multiple parameters

(2015) Itamar Sela et al.   NUCLEIC ACIDS RESEARCH

Wnt signaling underlies evolution and development of the butterfly wing pattern symmetry systems

(2014) Arnaud Martin et al.   DEVELOPMENTAL BIOLOGY

CRISPR/Cas9 mediated genome engineering in Drosophila

(2014) Andrew Bassett et al.   METHODS

Ultrastructure and morphogenesis of the wing scales in Heliconius erato phyllis (Lepidoptera: Nymphalidae): What silvery/brownish surfaces can tell us about the development of color patterning?

(2013) A.C.B. Aymone et al.   ARTHROPOD STRUCTURE & DEVELOPMENT

Transposition of native chromatin for fast and sensitive epigenomic profiling of open chromatin, DNA-binding proteins and nucleosome position

(2013) Jason D Buenrostro et al.   NATURE METHODS

Development of polyploidy of scale-building cells in the wings of Manduca sexta

(2012) Eugenia H. Cho et al.   ARTHROPOD STRUCTURE & DEVELOPMENT

Geneious Basic: An integrated and extendable desktop software platform for the organization and analysis of sequence data

(2012) M. Kearse et al.   BIOINFORMATICS

Testing historical explanations for gradients in species richness in heliconiine butterflies of tropical America

(2012) NEIL ROSSER et al.   BIOLOGICAL JOURNAL OF THE LINNEAN SOCIETY

Butterfly genome reveals promiscuous exchange of mimicry adaptations among species

(2012) Kanchon K. Dasmahapatra et al.   NATURE

Fiji: an open-source platform for biological-image analysis

(2012) Johannes Schindelin et al.   NATURE METHODS

Diversification of complex butterfly wing patterns by repeated regulatory evolution of a Wnt ligand

(2012) A. Martin et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

optix Drives the Repeated Convergent Evolution of Butterfly Wing Pattern Mimicry

(2011) R. D. Reed et al.   SCIENCE

New Algorithms and Methods to Estimate Maximum-Likelihood Phylogenies: Assessing the Performance of PhyML 3.0

(2010) Stéphane Guindon et al.   SYSTEMATIC BIOLOGY

Fast and accurate short read alignment with Burrows-Wheeler transform

(2009) H. Li et al.   BIOINFORMATICS

Is Genetic Evolution Predictable?

(2009) D. L. Stern et al.   SCIENCE

Adaptive Evolution of Pelvic Reduction in Sticklebacks by Recurrent Deletion of a Pitx1 Enhancer

(2009) Y. F. Chan et al.   SCIENCE

A Gene-Based Linkage Map for Bicyclus anynana Butterflies Allows for a Comprehensive Analysis of Synteny with the Lepidopteran Reference Genome

(2009) Patrícia Beldade et al.   PLoS Genetics

Gene expression underlying adaptive variation in Heliconius wing patterns: non-modular regulation of overlapping cinnabar and vermilion prepatterns

(2007) R. D Reed et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES