Many functionally connected loci foster adaptive diversification along a neotropical hybrid zone

Selective sweeps on novel and introgressed variation shape mimicry loci in a butterfly adaptive radiation

(2020) Markus Moest et al.   PLOS BIOLOGY

The genetic architecture of adaptation: convergence and pleiotropy in Heliconius wing pattern evolution

(2019) Jake Morris et al.   HEREDITY

Polygenic adaptation: From sweeps to subtle frequency shifts

(2019) Ilse Höllinger et al.   PLoS Genetics

Network hubs affect evolvability

(2019) Jana Helsen et al.   PLOS BIOLOGY

An integrative genomic analysis of the Longshanks selection experiment for longer limbs in mice

(2019) João PL Castro et al.   eLife

Sec20 is Required for Autophagic and Endocytic Degradation Independent of Golgi-ER Retrograde Transport

(2019) Lakatos et al.   Cells

Chromatin conformation remains stable upon extensive transcriptional changes driven by heat shock

(2019) Judhajeet Ray et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Genetic Characteristic and RNA-Seq Analysis in Transparent Mutant of Carp–Goldfish Nucleocytoplasmic Hybrid

(2019) Lingling Zhou et al.   Genes

Parallel evolution of ancient, pleiotropic enhancers underlies butterfly wing pattern mimicry

(2019) James J. Lewis et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The histone demethylase KDM5 controls developmental timing in Drosophila by promoting prothoracic gland endocycles

(2019) Coralie Drelon et al.   DEVELOPMENT

Head formation requires Dishevelled degradation that is mediated by March2 in concert with Dapper1

(2018) Hyeyoon Lee et al.   DEVELOPMENT

Patterns of Z chromosome divergence among Heliconius species highlight the importance of historical demography

(2018) Steven M. Van Belleghem et al.   MOLECULAR ECOLOGY

Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals

(2018) James J. Lee et al.   NATURE GENETICS

Karyopherin α-3 is a key protein in the pathogenesis of spinocerebellar ataxia type 3 controlling the nuclear localization of ataxin-3

(2018) Anna Sergeevna Sowa et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The exostosin family of glycosyltransferases: mRNA expression profiles and heparan sulphate structure in human breast carcinoma cell lines

(2018) Lawrence F. Sembajwe et al.   BIOSCIENCE REPORTS

Genome-Wide Regulatory Adaptation Shapes Population-Level Genomic Landscapes in Heliconius

(2018) James J Lewis et al.   MOLECULAR BIOLOGY AND EVOLUTION

Polygenic adaptation and convergent evolution on growth and cardiac genetic pathways in African and Asian rainforest hunter-gatherers

(2018) Christina M. Bergey et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Agouti-related peptide 2 facilitates convergent evolution of stripe patterns across cichlid fish radiations

(2018) Claudius F. Kratochwil et al.   SCIENCE

Regulation of NOTCH signaling by RAB7 and RAB8 requires carboxyl methylation by ICMT

(2017) Helen Court et al.   JOURNAL OF CELL BIOLOGY

UCHL1 Regulates Melanogenesis through Controlling MITF Stability in Human Melanocytes

(2017) Eun Young Seo et al.   JOURNAL OF INVESTIGATIVE DERMATOLOGY

Soft Sweeps Are the Dominant Mode of Adaptation in the Human Genome

(2017) Daniel R. Schrider et al.   MOLECULAR BIOLOGY AND EVOLUTION

Network-Based Identification of Adaptive Pathways in Evolved Ethanol-Tolerant Bacterial Populations

(2017) Toon Swings et al.   MOLECULAR BIOLOGY AND EVOLUTION

A screen for E3 ubiquitination ligases that genetically interact with the adaptor protein Cindr during Drosophila eye patterning

(2017) Kwami F. Ketosugbo et al.   PLoS One

Single master regulatory gene coordinates the evolution and development of butterfly color and iridescence

(2017) Linlin Zhang et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Comparative studies of vertebrate iduronate 2-sulfatase (IDS) genes and proteins: evolution of A mammalian X-linked gene

(2017) Roger S. Holmes   3 Biotech

Comparative studies of vertebrate iduronate 2-sulfatase (IDS) genes and proteins: evolution of A mammalian X-linked gene

(2017) Roger S. Holmes   3 Biotech

Repeated divergent selection on pigmentation genes in a rapid finch radiation

(2017) Leonardo Campagna et al.   Science Advances

Complex modular architecture around a simple toolkit of wing pattern genes

(2017) Steven M. Van Belleghem et al.   Nature Ecology & Evolution

SweepFinder2: increased sensitivity, robustness and flexibility

(2016) Michael DeGiorgio et al.   BIOINFORMATICS

Plumage Genes and Little Else Distinguish the Genomes of Hybridizing Warblers

(2016) David P.L. Toews et al.   CURRENT BIOLOGY

Natural Selection and Genetic Diversity in the Butterfly Heliconius melpomene

(2016) Simon H. Martin et al.   GENETICS

Long-Term Memory in Drosophila Is Influenced by Histone Deacetylase HDAC4 Interacting with SUMO-Conjugating Enzyme Ubc9

(2016) S. Schwartz et al.   GENETICS

Squamous Cell Carcinoma-related Oncogene (SCCRO) Family Members Regulate Cell Growth and Proliferation through Their Cooperative and Antagonistic Effects on Cullin Neddylation

(2016) Weimin Fu et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Recurrent selection explains parallel evolution of genomic regions of high relative but low absolute differentiation in a ring species

(2016) Darren E. Irwin et al.   MOLECULAR ECOLOGY

The gene cortex controls mimicry and crypsis in butterflies and moths

(2016) Nicola J. Nadeau et al.   NATURE

Cullin-4 regulates Wingless and JNK signaling-mediated cell death in the Drosophila eye

(2016) Meghana Tare et al.   Cell Death & Disease

ChIP-Seq-Annotated Heliconius erato Genome Highlights Patterns of cis -Regulatory Evolution in Lepidoptera

(2016) James J. Lewis et al.   Cell Reports

Natural Selection and Genetic Diversity in the Butterfly Heliconius melpomene

(2016) Simon H. Martin et al.   GENETICS

Juicer Provides a One-Click System for Analyzing Loop-Resolution Hi-C Experiments

(2016) Neva C. Durand et al.   Cell Systems

Divergence with gene flow across a speciation continuum of Heliconius butterflies

(2015) Megan A. Supple et al.   BMC EVOLUTIONARY BIOLOGY

Wing patterning genes and coevolution of Müllerian mimicry inHeliconiusbutterflies: Support from phylogeography, cophylogeny, and divergence times

(2015) Jennifer F. Hoyal Cuthill et al.   EVOLUTION

Detecting recent selective sweeps while controlling for mutation rate and background selection

(2015) Christian D. Huber et al.   MOLECULAR ECOLOGY

Daple is a novel non-receptor GEF required for trimeric G protein activation in Wnt signaling

(2015) Nicolas Aznar et al.   eLife

A 3D Map of the Human Genome at Kilobase Resolution Reveals Principles of Chromatin Looping

(2014) Suhas S.P. Rao et al.   CELL

Dynamics of F-actin prefigure the structure of butterfly wing scales

(2014) April Dinwiddie et al.   DEVELOPMENTAL BIOLOGY

Population genomics of parallel hybrid zones in the mimetic butterflies,H. melpomeneandH. erato

(2014) Nicola J. Nadeau et al.   GENOME RESEARCH

Reanalysis suggests that genomic islands of speciation are due to reduced diversity, not reduced gene flow

(2014) Tami E. Cruickshank et al.   MOLECULAR ECOLOGY

Genomic architecture of adaptive color pattern divergence and convergence in Heliconius butterflies

(2013) M. A. Supple et al.   GENOME RESEARCH

Differential and competitive regulation of human melanocortin 1 receptor signaling by  -arrestin isoforms

(2013) M. Abrisqueta et al.   JOURNAL OF CELL SCIENCE

Multi-Allelic Major Effect Genes Interact with Minor Effect QTLs to Control Adaptive Color Pattern Variation in Heliconius erato

(2013) Riccardo Papa et al.   PLoS One

Population genomics of rapid adaptation by soft selective sweeps

(2013) Philipp W. Messer et al.   TRENDS IN ECOLOGY & EVOLUTION

Power and Predictive Accuracy of Polygenic Risk Scores

(2013) Frank Dudbridge   PLoS Genetics

Depletion of histone deacetylase 3 antagonizes PI3K-mediated overgrowth ofDrosophilaorgans through the acetylation of histone H4 at lysine 16

(2012) Wen-Wen Lv et al.   JOURNAL OF CELL SCIENCE

Fast gapped-read alignment with Bowtie 2

(2012) Ben Langmead et al.   NATURE METHODS

The variant call format and VCFtools

(2011) P. Danecek et al.   BIOINFORMATICS

THE QTN PROGRAM AND THE ALLELES THAT MATTER FOR EVOLUTION: ALL THAT'S GOLD DOES NOT GLITTER

(2011) Matthew V. Rockman   EVOLUTION

Arginine methylation of G3BP1 in response to Wnt3a regulates  -catenin mRNA

(2011) R. K. Bikkavilli et al.   JOURNAL OF CELL SCIENCE

optix Drives the Repeated Convergent Evolution of Butterfly Wing Pattern Mimicry

(2011) R. D. Reed et al.   SCIENCE

BEDTools: a flexible suite of utilities for comparing genomic features

(2010) Aaron R. Quinlan et al.   BIOINFORMATICS

Adaptation – not by sweeps alone

(2010) Jonathan K. Pritchard et al.   NATURE REVIEWS GENETICS

Genome-wide analysis of Notch signalling in Drosophila by transgenic RNAi

(2009) Jennifer L. Mummery-Widmer et al.   NATURE

VAC14 nucleates a protein complex essential for the acute interconversion of PI3P and PI(3,5)P2 in yeast and mouse

(2008) Natsuko Jin et al.   EMBO JOURNAL

Butterfly speciation and the distribution of gene effect sizes fixed during adaptation

(2008) S W Baxter et al.   HEREDITY

A cis-acting regulatory mutation causes premature hair graying and susceptibility to melanoma in the horse

(2008) Gerli Rosengren Pielberg et al.   NATURE GENETICS

Model-based Analysis of ChIP-Seq (MACS)

(2008) Yong Zhang et al.   GENOME BIOLOGY