The gene cortex controls mimicry and crypsis in butterflies and moths

Evolutionary Novelty in a Butterfly Wing Pattern through Enhancer Shuffling

(2016) Richard W. R. Wallbank et al.   PLOS BIOLOGY

Mapping and recombination analysis of two moth colour mutations, Black moth and Wild wing spot, in the silkworm Bombyx mori

(2015) K Ito et al.   HEREDITY

HTSeq--a Python framework to work with high-throughput sequencing data

(2014) S. Anders et al.   BIOINFORMATICS

Trimmomatic: a flexible trimmer for Illumina sequence data

(2014) Anthony M. Bolger et al.   BIOINFORMATICS

Population genomics of parallel hybrid zones in the mimetic butterflies,H. melpomeneandH. erato

(2014) Nicola J. Nadeau et al.   GENOME RESEARCH

Genomic architecture of adaptive color pattern divergence and convergence in Heliconius butterflies

(2013) M. A. Supple et al.   GENOME RESEARCH

Genome-wide evidence for speciation with gene flow inHeliconiusbutterflies

(2013) Simon H. Martin et al.   GENOME RESEARCH

Timing and Patterns in the Taxonomic Diversification of Lepidoptera (Butterflies and Moths)

(2013) Niklas Wahlberg et al.   PLoS One

Transposable element evolution in Heliconius suggests genome diversity within Lepidoptera

(2013) Christine A Lavoie et al.   Mobile DNA

Selective bird predation on the peppered moth: the last experiment of Michael Majerus

(2012) L. M. Cook et al.   Biology Letters

Partial Complementarity of the Mimetic Yellow Bar Phenotype in Heliconius Butterflies

(2012) Luana S. Maroja et al.   PLoS One

Diversification of complex butterfly wing patterns by repeated regulatory evolution of a Wnt ligand

(2012) A. Martin et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Adaptive Introgression across Species Boundaries in Heliconius Butterflies

(2012) Carolina Pardo-Diaz et al.   PLoS Genetics

FLASH: fast length adjustment of short reads to improve genome assemblies

(2011) T. Magoc et al.   BIOINFORMATICS

MAKER2: an annotation pipeline and genome-database management tool for second-generation genome projects

(2011) Carson Holt et al.   BMC BIOINFORMATICS

RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome

(2011) Bo Li et al.   BMC BIOINFORMATICS

Characterisation and expression of microRNAs in developing wings of the neotropical butterfly Heliconius melpomene

(2011) Alison K Surridge et al.   BMC GENOMICS

Chromosomal rearrangements maintain a polymorphic supergene controlling butterfly mimicry

(2011) Mathieu Joron et al.   NATURE

A framework for variation discovery and genotyping using next-generation DNA sequencing data

(2011) Mark A DePristo et al.   NATURE GENETICS

T-Coffee: a web server for the multiple sequence alignment of protein and RNA sequences using structural information and homology extension

(2011) P. Di Tommaso et al.   NUCLEIC ACIDS RESEARCH

Structural insights into anaphase-promoting complex function and mechanism

(2011) D. Barford   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Genomic islands of divergence in hybridizingHeliconiusbutterflies identified by large-scale targeted sequencing

(2011) Nicola J. Nadeau et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Wing patterning gene redefines the mimetic history of Heliconius butterflies

(2011) H. M. Hines et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Industrial Melanism in British Peppered Moths Has a Singular and Recent Mutational Origin

(2011) A. E. van't Hof et al.   SCIENCE

optix Drives the Repeated Convergent Evolution of Butterfly Wing Pattern Mimicry

(2011) R. D. Reed et al.   SCIENCE

baySeq: Empirical Bayesian methods for identifying differential expression in sequence count data

(2010) Thomas J Hardcastle et al.   BMC BIOINFORMATICS

Stampy: A statistical algorithm for sensitive and fast mapping of Illumina sequence reads

(2010) G. Lunter et al.   GENOME RESEARCH

Characterization of a hotspot for mimicry: assembly of a butterfly wing transcriptome to genomic sequence at theHmYb/Sblocus

(2010) LAURA FERGUSON et al.   MOLECULAR ECOLOGY

Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation

(2010) Cole Trapnell et al.   NATURE BIOTECHNOLOGY

Genomic Hotspots for Adaptation: The Population Genetics of Müllerian Mimicry in Heliconius erato

(2010) Brian A. Counterman et al.   PLoS Genetics

Differential expression analysis for sequence count data

(2010) Simon Anders et al.   GENOME BIOLOGY

TopHat: discovering splice junctions with RNA-Seq

(2009) Cole Trapnell et al.   BIOINFORMATICS

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

Fast and accurate short read alignment with Burrows-Wheeler transform

(2009) H. Li et al.   BIOINFORMATICS

A Gene-Based Linkage Map for Bicyclus anynana Butterflies Allows for a Comprehensive Analysis of Synteny with the Lepidopteran Reference Genome

(2009) Patrícia Beldade et al.   PLoS Genetics

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

(2009) Ben Langmead et al.   GENOME BIOLOGY

Ecological Speciation in Mimetic Butterflies

(2008) Chris D. Jiggins   BIOSCIENCE