Global distribution patterns of marine nitrogen-fixers by imaging and molecular methods

Transcriptome reconstruction and functional analysis of eukaryotic marine plankton communities via high-throughput metagenomics and metatranscriptomics

(2020) Alexey Vorobev et al.   GENOME RESEARCH

Intriguing size distribution of the uncultured and globally widespread marine non-cyanobacterial diazotroph Gamma-A

(2020) Francisco M. Cornejo-Castillo et al.   ISME Journal

Community-Level Responses to Iron Availability in Open Ocean Planktonic Ecosystems

(2019) Luigi Caputi et al.   GLOBAL BIOGEOCHEMICAL CYCLES

Carbon fixation by marine ultra-small prokaryotes

(2019) Romain Lannes et al.   Genome Biology and Evolution

Direct Detection of Heterotrophic Diazotrophs Associated with Planktonic Aggregates

(2019) Eyal Geisler et al.   Scientific Reports

Diversity, Genomics, and Distribution of Phytoplankton-Cyanobacterium Single-Cell Symbiotic Associations

(2019) Rachel A. Foster et al.   Annual Review of Microbiology

Gene Expression Changes and Community Turnover Differentially Shape the Global Ocean Metatranscriptome

(2019) Guillem Salazar et al.   CELL

Data‐Driven Modeling of the Distribution of Diazotrophs in the Global Ocean

(2019) Weiyi Tang et al.   GEOPHYSICAL RESEARCH LETTERS

Trichodesmium and other planktonic cyanobacteria in New Caledonian waters (SW tropical Pacific) during an El Niño episode

(2018) MM Barboza Tenório et al.   AQUATIC MICROBIAL ECOLOGY

Iron and phosphorus deprivation induce sociality in the marine bloom-forming cyanobacterium Trichodesmium

(2018) Yael Tzubari et al.   ISME Journal

A global ocean atlas of eukaryotic genes

(2018) Quentin Carradec et al.   Nature Communications

Nitrogen-fixing populations of Planctomycetes and Proteobacteria are abundant in surface ocean metagenomes

(2018) Tom O. Delmont et al.   Nature Microbiology

UCYN-A3, a newly characterized open ocean sublineage of the symbiotic N2 -fixing cyanobacterium Candidatus Atelocyanobacterium thalassa

(2018) Francisco M. Cornejo-Castillo et al.   ENVIRONMENTAL MICROBIOLOGY

Diverse diazotrophs are present on sinking particles in the North Pacific Subtropical Gyre

(2018) Hanna Farnelid et al.   ISME Journal

OUP accepted manuscript

(2018)   NUCLEIC ACIDS RESEARCH

Biological nitrogen fixation in the oxygen-minimum region of the eastern tropical North Pacific ocean

(2017) Amal Jayakumar et al.   ISME Journal

The Use of Degenerate Primers in qPCR Analysis of Functional Genes Can Cause Dramatic Quantification Bias as Revealed by Investigation of nifH Primer Performance

(2017) John Christian Gaby et al.   MICROBIAL ECOLOGY

Carbon sequestration in the deep Atlantic enhanced by Saharan dust

(2017) Katsiaryna Pabortsava et al.   Nature Geoscience

Quantitative 3D-imaging for cell biology and ecology of environmental microbial eukaryotes

(2017) Sebastien Colin et al.   eLife

Chasing after Non-cyanobacterial Nitrogen Fixation in Marine Pelagic Environments

(2017) Pia H. Moisander et al.   Frontiers in Microbiology

Viral to metazoan marine plankton nucleotide sequences from the Tara Oceans expedition

(2017) Adriana Alberti et al.   Scientific Data

Genomic divergence within non-photosynthetic cyanobacterial endosymbionts in rhopalodiacean diatoms

(2017) Takuro Nakayama et al.   Scientific Reports

New insights into the ecology of the globally significant uncultured nitrogen-fixing symbiont UCYN-A

(2016) H Farnelid et al.   AQUATIC MICROBIAL ECOLOGY

A quantitative analysis of the direct and indirect costs of nitrogen fixation: a model based on Azotobacter vinelandii

(2016) Keisuke Inomura et al.   ISME Journal

Absolute quantification of microbial taxon abundances

(2016) Ruben Props et al.   ISME Journal

Variable depth distribution ofTrichodesmiumclades in the North Pacific Ocean

(2016) Mónica Rouco et al.   Environmental Microbiology Reports

Cyanobacterial symbionts diverged in the late Cretaceous towards lineage-specific nitrogen fixation factories in single-celled phytoplankton

(2016) Francisco M. Cornejo-Castillo et al.   Nature Communications

Sources of iron and phosphate affect the distribution of diazotrophs in the North Atlantic

(2015) Jenni-Marie Ratten et al.   DEEP-SEA RESEARCH PART II-TOPICAL STUDIES IN OCEANOGRAPHY

Nitrogen-fixing bacteria associated with copepods in coastal waters of the North Atlantic Ocean

(2015) Rosemary E. Scavotto et al.   ENVIRONMENTAL MICROBIOLOGY

Global distribution and vertical patterns of a prymnesiophyte–cyanobacteria obligate symbiosis

(2015) Ana M Cabello et al.   ISME Journal

Structure and function of the global ocean microbiome

(2015) S. Sunagawa et al.   SCIENCE

Genomics and Ecophysiology of Heterotrophic Nitrogen-Fixing Bacteria Isolated from Estuarine Surface Water

(2015) Mikkel Bentzon-Tilia et al.   mBio

Open science resources for the discovery and analysis of Tara Oceans data

(2015) Stéphane Pesant et al.   Scientific Data

Profiling gene expression to distinguish the likely active diazotrophs from a sea of genetic potential in marine sediments

(2014) S. M. Brown et al.   ENVIRONMENTAL MICROBIOLOGY

Marinobacterium mangrovicola sp. nov., a marine nitrogen-fixing bacterium isolated from mangrove roots of Rhizophora mangle

(2014) G. Alfaro-Espinoza et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

Facets of diazotrophy in the oxygen minimum zone waters off Peru

(2014) Carolin R Loescher et al.   ISME Journal

Complete genome of a nonphotosynthetic cyanobacterium in a diatom reveals recent adaptations to an intracellular lifestyle

(2014) T. Nakayama et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The Marine Microbial Eukaryote Transcriptome Sequencing Project (MMETSP): Illuminating the Functional Diversity of Eukaryotic Life in the Oceans through Transcriptome Sequencing

(2014) Patrick J. Keeling et al.   PLOS BIOLOGY

CopyRighter: a rapid tool for improving the accuracy of microbial community profiles through lineage-specific gene copy number correction

(2014) Florent E Angly et al.   Microbiome

The paradox of marine heterotrophic nitrogen fixation: abundances of heterotrophic diazotrophs do not account for nitrogen fixation rates in the Eastern Tropical South Pacific

(2013) Kendra A. Turk-Kubo et al.   ENVIRONMENTAL MICROBIOLOGY

Nitrogen-fixing cyanobacteria (free-living and diatom endosymbionts): their use in southern California stream bioassessment

(2013) Rosalina Stancheva et al.   HYDROBIOLOGIA

Exploring nucleo-cytoplasmic large DNA viruses in Tara Oceans microbial metagenomes

(2013) Pascal Hingamp et al.   ISME Journal

Measuring carbon and N2fixation in field populations of colonial and free-living unicellular cyanobacteria using nanometer-scale secondary ion mass spectrometry1

(2013) Rachel A. Foster et al.   JOURNAL OF PHYCOLOGY

Processes and patterns of oceanic nutrient limitation

(2013) C. M. Moore et al.   Nature Geoscience

Metagenomic species profiling using universal phylogenetic marker genes

(2013) Shinichi Sunagawa et al.   NATURE METHODS

CD-HIT: accelerated for clustering the next-generation sequencing data

(2012) Limin Fu et al.   BIOINFORMATICS

Diversity, distribution, and expression of diazotrophnifHgenes in oxygen-deficient waters of the Arabian Sea

(2012) Amal Jayakumar et al.   FEMS MICROBIOLOGY ECOLOGY

Description of Cobetia amphilecti sp. nov., Cobetia litoralis sp. nov. and Cobetia pacifica sp. nov., classification of Halomonas halodurans as a later heterotypic synonym of Cobetia marina and emended descriptions of the genus Cobetia and Cobetia marina

(2012) L. A. Romanenko et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

Predictable and efficient carbon sequestration in the North Pacific Ocean supported by symbiotic nitrogen fixation

(2012) D. M. Karl et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Unicellular Cyanobacterium Symbiotic with a Single-Celled Eukaryotic Alga

(2012) A. W. Thompson et al.   SCIENCE

Incorporating 16S Gene Copy Number Information Improves Estimates of Microbial Diversity and Abundance

(2012) Steven W. Kembel et al.   PLoS Computational Biology

Ploidy in cyanobacteria

(2011) Marco Griese et al.   FEMS MICROBIOLOGY LETTERS

Interconnection of nitrogen fixers and iron in the Pacific Ocean: Theory and numerical simulations

(2011) S. Dutkiewicz et al.   GLOBAL BIOGEOCHEMICAL CYCLES

Descriptions of Rhodopseudomonas parapalustris sp. nov., Rhodopseudomonas harwoodiae sp. nov. and Rhodopseudomonas pseudopalustris sp. nov., and emended description of Rhodopseudomonas palustris

(2011) V. V. Ramana et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

Massive multiplication of genome and ribosomes in dormant cells (akinetes) of Aphanizomenon ovalisporum (Cyanobacteria)

(2011) Assaf Sukenik et al.   ISME Journal

Seasonality of N2 fixation andnifHgene diversity in the Gulf of Aqaba (Red Sea)

(2011) R. A. Foster et al.   LIMNOLOGY AND OCEANOGRAPHY

Bacterial transcriptomics: what is beyond the RNA horiz-ome?

(2011) Marc Güell et al.   NATURE REVIEWS MICROBIOLOGY

Nitrogen Fixation in Denitrified Marine Waters

(2011) Camila Fernandez et al.   PLoS One

Nitrogenase Gene Amplicons from Global Marine Surface Waters Are Dominated by Genes of Non-Cyanobacteria

(2011) Hanna Farnelid et al.   PLoS One

ISOLATION OF CALOTHRIX RHIZOSOLENIAE (CYANOBACTERIA) STRAIN SC01 FROM CHAETOCEROS (BACILLARIOPHYTA) SPP. DIATOMS OF THE SUBTROPICAL NORTH PACIFIC OCEAN1

(2010) Rachel A. Foster et al.   JOURNAL OF PHYCOLOGY

The Underwater Vision Profiler 5: An advanced instrument for high spatial resolution studies of particle size spectra and zooplankton

(2010) Marc Picheral et al.   LIMNOLOGY AND OCEANOGRAPHY-METHODS

Metabolic streamlining in an open-ocean nitrogen-fixing cyanobacterium

(2010) H. James Tripp et al.   NATURE

TranslatorX: multiple alignment of nucleotide sequences guided by amino acid translations

(2010) Federico Abascal et al.   NUCLEIC ACIDS RESEARCH

Unicellular Cyanobacterial Distributions Broaden the Oceanic N2 Fixation Domain

(2010) P. H. Moisander et al.   SCIENCE

New Algorithms and Methods to Estimate Maximum-Likelihood Phylogenies: Assessing the Performance of PhyML 3.0

(2010) Stéphane Guindon et al.   SYSTEMATIC BIOLOGY

Complete genome sequence of Arcobacter nitrofigilis type strain (CIT)

(2010) Amrita Pati et al.   Standards in Genomic Sciences

Fast and accurate short read alignment with Burrows-Wheeler transform

(2009) H. Li et al.   BIOINFORMATICS

Abundances and Distributions of the Dominant nifH Phylotypes in the Northern Atlantic Ocean

(2008) R. J. Langlois et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Improved accuracy of multiple ncRNA alignment by incorporating structural information into a MAFFT-based framework

(2008) Kazutaka Katoh et al.   BMC BIOINFORMATICS

Phenotypic and genotypic characterization of multiple strains of the diazotrophic cyanobacterium,Crocosphaera watsonii, isolated from the open ocean

(2008) Eric A. Webb et al.   ENVIRONMENTAL MICROBIOLOGY

Amazon River enhances diazotrophy and carbon sequestration in the tropical North Atlantic Ocean

(2008) A. Subramaniam et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA