Land-use types shape soil microbial compositions under rapid urbanization in the Xiong'an New Area, China

Plant functional groups associate with distinct arbuscular mycorrhizal fungal communities

(2020) John Davison et al.   NEW PHYTOLOGIST

Soil textural heterogeneity impacts bacterial but not fungal diversity

(2020) Fiona M. Seaton et al.   SOIL BIOLOGY & BIOCHEMISTRY

The global-scale distributions of soil protists and their contributions to belowground systems

(2020) Angela M. Oliverio et al.   Science Advances

PICRUSt2 for prediction of metagenome functions

(2020) Gavin M. Douglas et al.   NATURE BIOTECHNOLOGY

Land use as a driver for protist community structure in soils under agricultural use across Europe

(2020) Susana S. Santos et al.   SCIENCE OF THE TOTAL ENVIRONMENT

New Approaches in Urban Forestry to Minimize Invasive Species Impacts: The Case of Xiongan New Area in China

(2020) Hui-Ping Li et al.   Insects

Community structure and diversity of the microbiomes of two microhabitats at the root–soil interface: implications of meta-analysis of the root-zone soil and root endosphere microbial communities in Xiong’an New Area

(2020) Can Wang et al.   CANADIAN JOURNAL OF MICROBIOLOGY

Soil microbial composition varies in response to coffee agroecosystem management

(2020) Stephanie D Jurburg et al.   FEMS MICROBIOLOGY ECOLOGY

Meta-Analysis and Evaluation by Insect-Mediated Baiting Reveal Different Patterns of Hypocrealean Entomopathogenic Fungi in the Soils From Two Regions of China

(2020) Abolfazl Masoudi et al.   Frontiers in Microbiology

A review on the plant microbiome: Ecology, functions, and emerging trends in microbial application

(2019) Stéphane Compant et al.   Journal of Advanced Research

Protist communities are more sensitive to nitrogen fertilization than other microorganisms in diverse agricultural soils

(2019) Zhi-Bo Zhao et al.   Microbiome

Changes in Trophic Groups of Protists With Conversion of Rainforest Into Rubber and Oil Palm Plantations

(2019) Garvin Schulz et al.   Frontiers in Microbiology

Divergent national-scale trends of microbial and animal biodiversity revealed across diverse temperate soil ecosystems

(2019) Paul B. L. George et al.   Nature Communications

Climate–land-use interactions shape tropical mountain biodiversity and ecosystem functions

(2019) Marcell K. Peters et al.   NATURE

Bacterial community structure of two Mediterranean agricultural soils amended with spent coffee grounds

(2019) Maria Vela-Cano et al.   APPLIED SOIL ECOLOGY

Mycorrhizal Fungi Respond to Resource Inequality by Moving Phosphorus from Rich to Poor Patches across Networks

(2019) Matthew D. Whiteside et al.   CURRENT BIOLOGY

Effect of land use on the composition of bacterial and fungal communities in saline–sodic soils

(2019) Haojie Feng et al.   LAND DEGRADATION & DEVELOPMENT

Soil Salinity and pH Drive Soil Bacterial Community Composition and Diversity Along a Lateritic Slope in the Avon River Critical Zone Observatory, Western Australia

(2019) Flora J. M. O’Brien et al.   Frontiers in Microbiology

Effects of grassland afforestation on structure and function of soil bacterial and fungal communities

(2019) Kaibo Wang et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Impact of anthropogenic activities on the sediment microbial communities of Baiyangdian shallow lake

(2019) Wenjun Wang et al.   International Journal of Sediment Research

The effect of habitat changes along the urbanization gradient for breeding birds: an example from the Xiong’an New Area

(2019) Shilin Xie et al.   PeerJ

Distribution of prokaryotic communities throughout the Chernozem profiles under different land uses for over a century

(2018) Mikhail V. Semenov et al.   APPLIED SOIL ECOLOGY

Prediction of ecological effects of potential population and impervious surface increases using a remote sensing based ecological index (RSEI)

(2018) Hanqiu Xu et al.   ECOLOGICAL INDICATORS

A global atlas of the dominant bacteria found in soil

(2018) Manuel Delgado-Baquerizo et al.   SCIENCE

3-D geologic architecture of Xiong’an New Area: Constraints from seismic reflection data

(2018) Dengfa He et al.   Science China-Earth Sciences

Responses of soil microbial communities to nutrient limitation in the desert-grassland ecological transition zone

(2018) Yongxing Cui et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Bacterial Preferences for Specific Soil Particle Size Fractions Revealed by Community Analyses

(2018) Michael Hemkemeyer et al.   Frontiers in Microbiology

Revisions to the Classification, Nomenclature, and Diversity of Eukaryotes

(2018) Sina M. Adl et al.   JOURNAL OF EUKARYOTIC MICROBIOLOGY

Land use driven change in soil pH affects microbial carbon cycling processes

(2018) Ashish A. Malik et al.   Nature Communications

Genetic and Functional Diversity of Bacterial Microbiome in Soils With Long Term Impacts of Petroleum Hydrocarbons

(2018) Anna Gałązka et al.   Frontiers in Microbiology

Soil microbial community responses to forage grass cultivation in degraded karst soils, Southwest China

(2018) Dejun Li et al.   LAND DEGRADATION & DEVELOPMENT

Protists: Puppet Masters of the Rhizosphere Microbiome

(2018) Zhilei Gao et al.   TRENDS IN PLANT SCIENCE

The Role of Host Genetic Signatures on Root–Microbe Interactions in the Rhizosphere and Endosphere

(2018) Peng Yu et al.   Frontiers in Plant Science

Differential responses of soil bacteria, fungi, archaea and protists to plant species richness and plant functional group identity

(2017) Sigrid Dassen et al.   MOLECULAR ECOLOGY

Distribution patterns of soil microbial eukaryotes suggests widespread algivory by phagotrophic protists as an alternative pathway for nutrient cycling

(2017) Christophe V.W. Seppey et al.   SOIL BIOLOGY & BIOCHEMISTRY

Parasites dominate hyperdiverse soil protist communities in Neotropical rainforests

(2017) Frédéric Mahé et al.   Nature Ecology & Evolution

Spatial variability of microbial richness and diversity and relationships with soil organic carbon, texture and structure across an agricultural field

(2016) Muhammad Naveed et al.   APPLIED SOIL ECOLOGY

The Biodiversity Changes in the Microbial Population of Soils Contaminated with Crude Oil

(2016) Firouz Abbasian et al.   CURRENT MICROBIOLOGY

Differences in soil micro-eukaryotic communities over soil pH gradients are strongly driven by parasites and saprotrophs

(2016) A. Ö. C. Dupont et al.   ENVIRONMENTAL MICROBIOLOGY

Land use change in the Amazon rain forest favours generalist fungi

(2016) Rebecca C. Mueller et al.   FUNCTIONAL ECOLOGY

FUNGuild: An open annotation tool for parsing fungal community datasets by ecological guild

(2016) Nhu H. Nguyen et al.   Fungal Ecology

The bacterial-fungal energy channel concept challenged by enormous functional versatility of soil protists

(2016) Stefan Geisen   SOIL BIOLOGY & BIOCHEMISTRY

Soil pH, total phosphorus, climate and distance are the major factors influencing microbial activity at a regional spatial scale

(2016) Haichuan Cao et al.   Scientific Reports

Land-use system shapes soil bacterial communities in Southeastern Amazon region

(2015) Lucas William Mendes et al.   APPLIED SOIL ECOLOGY

Tax4Fun: predicting functional profiles from metagenomic 16S rRNA data: Fig. 1.

(2015) Kathrin P. Aßhauer et al.   BIOINFORMATICS

Metatranscriptomic census of active protists in soils

(2015) Stefan Geisen et al.   ISME Journal

Soil conditions and land use intensification effects on soil microbial communities across a range of European field sites

(2015) Bruce C. Thomson et al.   SOIL BIOLOGY & BIOCHEMISTRY

Shifts in microbial diversity through land use intensity as drivers of carbon mineralization in soil

(2015) Vincent Tardy et al.   SOIL BIOLOGY & BIOCHEMISTRY

Particle size fractionation as a method for characterizing the nutrient content of municipal green waste used for composting

(2015) R.J. Haynes et al.   WASTE MANAGEMENT

Soil water availability strongly alters the community composition of soil protists

(2014) Geisen Stefan et al.   PEDOBIOLOGIA

High throughput sequencing analysis of biogeographical distribution of bacterial communities in the black soils of northeast China

(2014) Junjie Liu et al.   SOIL BIOLOGY & BIOCHEMISTRY

Climate change alters ecological strategies of soil bacteria

(2013) Sarah E. Evans et al.   ECOLOGY LETTERS

Soil microbial diversity patterns of a lowland spring environment

(2013) Sotirios Vasileiadis et al.   FEMS MICROBIOLOGY ECOLOGY

Changes in Diversity, Abundance, and Structure of Soil Bacterial Communities in Brazilian Savanna Under Different Land Use Systems

(2013) Pabulo Henrique Rampelotto et al.   MICROBIAL ECOLOGY

UPARSE: highly accurate OTU sequences from microbial amplicon reads

(2013) Robert C Edgar   NATURE METHODS

Experimental drought reduces the transfer of recently fixed plant carbon to soil microbes and alters the bacterial community composition in a mountain meadow

(2013) Lucia Fuchslueger et al.   NEW PHYTOLOGIST

Effects of plant species on macrophyte decomposition under three nutrient conditions in a eutrophic shallow lake, North China

(2012) Xia Li et al.   ECOLOGICAL MODELLING

Tropical Soil Bacterial Communities in Malaysia: pH Dominates in the Equatorial Tropics Too

(2012) Binu M. Tripathi et al.   MICROBIAL ECOLOGY

The Protist Ribosomal Reference database (PR2): a catalog of unicellular eukaryote Small Sub-Unit rRNA sequences with curated taxonomy

(2012) Laure Guillou et al.   NUCLEIC ACIDS RESEARCH

The SILVA ribosomal RNA gene database project: improved data processing and web-based tools

(2012) Christian Quast et al.   NUCLEIC ACIDS RESEARCH

A Coevolutionary Framework for Managing Disease-Suppressive Soils

(2011) Linda L. Kinkel et al.   Annual Review of Phytopathology

Soil microbial community response to drying and rewetting stress: does historical precipitation regime matter?

(2011) Sarah E. Evans et al.   BIOGEOCHEMISTRY

VennDiagram: a package for the generation of highly-customizable Venn and Euler diagrams in R

(2011) Hanbo Chen et al.   BMC BIOINFORMATICS

Negative Effects of Sample Pooling on PCR-Based Estimates of Soil Microbial Richness and Community Structure

(2010) D. K. Manter et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Low Pore Connectivity Increases Bacterial Diversity in Soil

(2010) J. K. Carson et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Search and clustering orders of magnitude faster than BLAST

(2010) Robert C. Edgar   BIOINFORMATICS

Characterization of Heteroatom Compounds in a Crude Oil and Its Saturates, Aromatics, Resins, and Asphaltenes (SARA) and Non-basic Nitrogen Fractions Analyzed by Negative-Ion Electrospray Ionization Fourier Transform Ion Cyclotron Resonance Mass Spectrometry

(2010) Quan Shi et al.   ENERGY & FUELS

QIIME allows analysis of high-throughput community sequencing data

(2010) J Gregory Caporaso et al.   NATURE METHODS

The UNITE database for molecular identification of fungi - recent updates and future perspectives

(2010) Kessy Abarenkov et al.   NEW PHYTOLOGIST

Contrasting Soil pH Effects on Fungal and Bacterial Growth Suggest Functional Redundancy in Carbon Mineralization

(2009) J. Rousk et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Land use influences soil fungal community composition across central Victoria, south-eastern Australia

(2008) Sabine Kasel et al.   SOIL BIOLOGY & BIOCHEMISTRY

The influence of soil properties on the structure of bacterial and fungal communities across land-use types

(2008) Christian L. Lauber et al.   SOIL BIOLOGY & BIOCHEMISTRY