Genetic and Functional Diversity of Bacterial Microbiome in Soils With Long Term Impacts of Petroleum Hydrocarbons

Understanding and Designing the Strategies for the Microbe-Mediated Remediation of Environmental Contaminants Using Omics Approaches

(2018) Muneer A. Malla et al.   Frontiers in Microbiology

A 16S rRNA gene sequencing and analysis protocol for the Illumina MiniSeq platform

(2018) Monica Pichler et al.   MicrobiologyOpen

Microbial community diversity and the interaction of soil under maize growth in different cultivation techniques

(2017) Gałązka Anna et al.   PLANT SOIL AND ENVIRONMENT

Effect of Environmental Variation on Estimating the Bacterial Species Richness

(2017) Yongjian Chen et al.   Frontiers in Microbiology

Monitoring soil bacteria with community-level physiological profiles using Biolog™ ECO-plates in the Netherlands and Europe

(2016) Michiel Rutgers et al.   APPLIED SOIL ECOLOGY

Evaluation of bacterial diversity recovered from petroleum samples using different physical matrices

(2016) Bruna Martins Dellagnezze et al.   BRAZILIAN JOURNAL OF MICROBIOLOGY

DADA2: High-resolution sample inference from Illumina amplicon data

(2016) Benjamin J Callahan et al.   NATURE METHODS

Response of Avena sativa, microorganisms and enzymes to contamination of soil with diesel oil

(2016) J. Wyszkowska et al.   PLANT SOIL AND ENVIRONMENT

Linking Microbial Enzymatic Activities and Functional Diversity of Soil around Earthworm Burrows and Casts

(2016) Jerzy Lipiec et al.   Frontiers in Microbiology

Biostimulation of Indigenous Microbial Community for Bioremediation of Petroleum Refinery Sludge

(2016) Jayeeta Sarkar et al.   Frontiers in Microbiology

Direct 16S rRNA-seq from bacterial communities: a PCR-independent approach to simultaneously assess microbial diversity and functional activity potential of each taxon

(2016) Riccardo Rosselli et al.   Scientific Reports

Bio-removal of diesel oil through a microbial consortium isolated from a polluted environment

(2015) Débora de Souza Pereira Silva et al.   INTERNATIONAL BIODETERIORATION & BIODEGRADATION

Enhanced Phytoremediation of Crude Oil-Polluted Soil by Four Plant Species: Effect of Inorganic and Organic Bioaugumentation

(2015) Eucharia Oluchi Nwaichi et al.   INTERNATIONAL JOURNAL OF PHYTOREMEDIATION

Phytoremediation of Polycyclic Aromatic Hydrocarbons in Soils Artificially Polluted Using Plant-Associated-Endophytic Bacteria and Dactylis glomerata as the Bioremediation Plant

(2015) Anna Gałązka et al.   Polish Journal of Microbiology

Bacterial Community Diversity of Oil-Contaminated Soils Assessed by High Throughput Sequencing of 16S rRNA Genes

(2015) Mu Peng et al.   International Journal of Environmental Research and Public Health

Development of a Dual-Index Sequencing Strategy and Curation Pipeline for Analyzing Amplicon Sequence Data on the MiSeq Illumina Sequencing Platform

(2013) James J. Kozich et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

phyloseq: An R Package for Reproducible Interactive Analysis and Graphics of Microbiome Census Data

(2013) Paul J. McMurdie et al.   PLoS One

Next-Generation Sequencing of Microbial Communities in the Athabasca River and Its Tributaries in Relation to Oil Sands Mining Activities

(2012) Etienne Yergeau et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Environmental Factors Affect Acidobacterial Communities below the Subgroup Level in Grassland and Forest Soils

(2012) Astrid Naether et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Impact of Long-Term Diesel Contamination on Soil Microbial Community Structure

(2012) Nora B. Sutton et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Characterization of bacterial consortia from diesel-contaminated Antarctic soils: Towards the design of tailored formulas for bioaugmentation

(2012) S. Vázquez et al.   INTERNATIONAL BIODETERIORATION & BIODEGRADATION

Generation of Multimillion-Sequence 16S rRNA Gene Libraries from Complex Microbial Communities by Assembling Paired-End Illumina Reads

(2011) Andrea K. Bartram et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Community level functional diversity and enzyme activities in paddy soils under different long-term fertilizer management practices

(2010) Md. Rashedul Islam et al.   BIOLOGY AND FERTILITY OF SOILS

Production of metabolites in the biodegradation of phenanthrene, fluoranthene and pyrene by the mixed culture of Mycobacterium sp. and Sphingomonas sp.

(2010) Yin Zhong et al.   BIORESOURCE TECHNOLOGY

Biological indicators capable of assessing thermal treatment efficiency of hydrocarbon mixture-contaminated soil

(2010) Jiangang Wang et al.   CHEMOSPHERE

Phytoremediation efficiency of a PAH-contaminated industrial soil using ryegrass, white clover, and celery as mono- and mixed cultures

(2010) Liang Meng et al.   JOURNAL OF SOILS AND SEDIMENTS

Pyrosequencing-Based Assessment of Soil pH as a Predictor of Soil Bacterial Community Structure at the Continental Scale

(2009) C. L. Lauber et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Environmental metabolomics: a critical review and future perspectives

(2009) Jacob G. Bundy et al.   Metabolomics

Functional diversity of the microbial community in the rhizosphere of chickpea grown in diesel fuel-spiked soil amended with Trichoderma ressei using sole-carbon-source utilization profiles

(2009) Aradhana Mishra et al.   WORLD JOURNAL OF MICROBIOLOGY & BIOTECHNOLOGY

Bacterial diversity characterization in petroleum samples from Brazilian reservoirs

(2008) Valéria Maia de Oliveira et al.   BRAZILIAN JOURNAL OF MICROBIOLOGY

Past, present and future of soil quality indices: A biological perspective

(2008) F. Bastida et al.   GEODERMA

16S rDNA analysis reveals low microbial diversity in community level physiological profile assays

(2008) Margarita Ros et al.   JOURNAL OF MICROBIOLOGICAL METHODS

Biodegradation of aged polycyclic aromatic hydrocarbons (PAHs) by microbial consortia in soil and slurry phases

(2007) Xiaojun Li et al.   JOURNAL OF HAZARDOUS MATERIALS