Inferring spikes from calcium imaging in dopamine neurons

A Unified Framework for Dopamine Signals across Timescales

(2020) HyungGoo R. Kim et al.   CELL

Unique contributions of parvalbumin and cholinergic interneurons in organizing striatal networks during movement

(2019) Howard J. Gritton et al.   NATURE NEUROSCIENCE

Specialized coding of sensory, motor and cognitive variables in VTA dopamine neurons

(2019) Ben Engelhard et al.   NATURE

Coordination of rapid cholinergic and dopaminergic signaling in striatum during spontaneous movement

(2019) Mark Howe et al.   eLife

Cytosolic Ca2+ Buffers Are Inherently Ca2+ Signal Modulators

(2019) Beat Schwaller   Cold Spring Harbor Perspectives in Biology

A large-scale standardized physiological survey reveals functional organization of the mouse visual cortex

(2019) Saskia E. J. de Vries et al.   NATURE NEUROSCIENCE

A Suite of Transgenic Driver and Reporter Mouse Lines with Enhanced Brain-Cell-Type Targeting and Functionality

(2018) Tanya L. Daigle et al.   CELL

Community-based benchmarking improves spike rate inference from two-photon calcium imaging data

(2018) Philipp Berens et al.   PLoS Computational Biology

Robustness of Spike Deconvolution for Neuronal Calcium Imaging

(2018) Marius Pachitariu et al.   JOURNAL OF NEUROSCIENCE

Dopamine neuron activity before action initiation gates and invigorates future movements

(2018) Joaquim Alves da Silva et al.   NATURE

On the efficient calculation of van Rossum distances

(2018) Conor Houghton et al.   NETWORK-COMPUTATION IN NEURAL SYSTEMS

Exact spike train inference via $\ell_{0}$ optimization

(2018) Sean Jewell et al.   Annals of Applied Statistics

Fast nonconvex deconvolution of calcium imaging data

(2018) Sean W Jewell et al.   BIOSTATISTICS

Dopamine reward prediction errors reflect hidden-state inference across time

(2017) Clara Kwon Starkweather et al.   NATURE NEUROSCIENCE

Fast online deconvolution of calcium imaging data

(2017) Johannes Friedrich et al.   PLoS Computational Biology

Rapid signalling in distinct dopaminergic axons during locomotion and reward

(2016) M. W. Howe et al.   NATURE

Dopamine neurons share common response function for reward prediction error

(2016) Neir Eshel et al.   NATURE NEUROSCIENCE

Benchmarking Spike Rate Inference in Population Calcium Imaging

(2016) Lucas Theis et al.   NEURON

Simultaneous Denoising, Deconvolution, and Demixing of Calcium Imaging Data

(2016) Eftychios A. Pnevmatikakis et al.   NEURON

Accurate spike estimation from noisy calcium signals for ultrafast three-dimensional imaging of large neuronal populations in vivo

(2016) Thomas Deneux et al.   Nature Communications

Arithmetic and local circuitry underlying dopamine prediction errors

(2015) Neir Eshel et al.   NATURE

Mesolimbic dopamine signals the value of work

(2015) Arif A Hamid et al.   NATURE NEUROSCIENCE

Diversity of Transgenic Mouse Models for Selective Targeting of Midbrain Dopamine Neurons

(2015) Stephan Lammel et al.   NEURON

Engagement of Neural Circuits Underlying 2D Spatial Navigation in a Rodent Virtual Reality System

(2014) Dmitriy Aronov et al.   NEURON

Cellular resolution optical access to brain regions in fissures: Imaging medial prefrontal cortex and grid cells in entorhinal cortex

(2014) Ryan J. Low et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Diversity and Homogeneity in Responses of Midbrain Dopamine Neurons

(2013) C. D. Fiorillo et al.   JOURNAL OF NEUROSCIENCE

Prolonged dopamine signalling in striatum signals proximity and value of distant rewards

(2013) Mark W. Howe et al.   NATURE

Ultrasensitive fluorescent proteins for imaging neuronal activity

(2013) Tsai-Wen Chen et al.   NATURE

Choice-specific sequences in parietal cortex during a virtual-navigation decision task

(2012) Christopher D. Harvey et al.   NATURE

Neuron-type-specific signals for reward and punishment in the ventral tegmental area

(2012) Jeremiah Y. Cohen et al.   NATURE

Calbindin controls release probability in ventral tegmental area dopamine neurons

(2012) Ping-Yue Pan et al.   NATURE NEUROSCIENCE

Fast Nonnegative Deconvolution for Spike Train Inference From Population Calcium Imaging

(2010) Joshua T. Vogelstein et al.   JOURNAL OF NEUROPHYSIOLOGY

A selective role for dopamine in stimulus–reward learning

(2010) Shelly B. Flagel et al.   NATURE

High-speed in vivo calcium imaging reveals neuronal network activity with near-millisecond precision

(2010) Benjamin F Grewe et al.   NATURE METHODS

Spike Inference from Calcium Imaging Using Sequential Monte Carlo Methods

(2009) Joshua T. Vogelstein et al.   BIOPHYSICAL JOURNAL

Endogenous Calcium Buffering Capacity of Substantia Nigral Dopamine Neurons

(2009) R. C. Foehring et al.   JOURNAL OF NEUROPHYSIOLOGY

Fast and Accurate Detection of Action Potentials From Somatic Calcium Fluctuations

(2008) Takuya Sasaki et al.   JOURNAL OF NEUROPHYSIOLOGY

Population imaging of ongoing neuronal activity in the visual cortex of awake rats

(2008) David S Greenberg et al.   NATURE NEUROSCIENCE

The temporal precision of reward prediction in dopamine neurons

(2008) Christopher D Fiorillo et al.   NATURE NEUROSCIENCE