Role of soil in the regulation of human and plant pathogens: soils' contributions to people

Salmonella persistence in soil depends on reciprocal interactions with indigenous microorganisms

(2020) Jasper Schierstaedt et al.   ENVIRONMENTAL MICROBIOLOGY

Zoonosis: An Emerging Link to Antibiotic Resistance Under “One Health Approach”

(2020) Nishant A. Dafale et al.   INDIAN JOURNAL OF MICROBIOLOGY

Plants and Associated Soil Microbiota Cooperatively Suppress Plant-Parasitic Nematodes

(2020) Olivera Topalović et al.   Frontiers in Microbiology

A Predictive Model for Survival of Escherichia coli O157:H7 and Generic E. coli in Soil Amended with Untreated Animal Manure

(2020) Hao Pang et al.   RISK ANALYSIS

Organic Amendments Modulate Soil Microbiota and Reduce Virus Disease Incidence in the TSWV-Tomato Pathosystem

(2020) Giuliano Bonanomi et al.   Pathogens

Manure-borne pathogens as an important source of water contamination: An update on the dynamics of pathogen survival/transport as well as practical risk mitigation strategies

(2020) Oluwadara Oluwaseun Alegbeleye et al.   INTERNATIONAL JOURNAL OF HYGIENE AND ENVIRONMENTAL HEALTH

Plant–microbiome interactions: from community assembly to plant health

(2020) Pankaj Trivedi et al.   NATURE REVIEWS MICROBIOLOGY

Survival of Escherichia coli O157 in autoclaved and natural sandy soil mesocosms

(2020) Christopher A. Baker et al.   PLoS One

Scoping review of approaches for improving antimicrobial stewardship in livestock farmers and veterinarians

(2020) L Gozdzielewska et al.   PREVENTIVE VETERINARY MEDICINE

Disease-mediated ecosystem services: Pathogens, plants, and people

(2020) Rachel E. Paseka et al.   TRENDS IN ECOLOGY & EVOLUTION

Exploring the Animal Waste Resistome: The Spread of Antimicrobial Resistance Genes Through the Use of Livestock Manure

(2020) Alice Checcucci et al.   Frontiers in Microbiology

Identifying potential threats to soil biodiversity

(2020) Mark Tibbett et al.   PeerJ

Organic Amendments for Pathogen and Nematode Control

(2020) Erin Rosskopf et al.   Annual Review of Phytopathology

Pathogenicity and infectivity of Phytophthora ramorum vary depending on host species, infected plant part, inoculum potential, pathogen genotype and temperature

(2020) Matteo Garbelotto et al.   PLANT PATHOLOGY

Management impact and benefit of cover crops on soil quality: A review

(2020) Adewole Tomiwa Adetunji et al.   SOIL & TILLAGE RESEARCH

How microbes can, and cannot, be used to assess soil health

(2020) Noah Fierer et al.   SOIL BIOLOGY & BIOCHEMISTRY

The Mandate for a Global “One Health” Approach to Antimicrobial Resistance Surveillance

(2019) Siddhartha Thakur et al.   AMERICAN JOURNAL OF TROPICAL MEDICINE AND HYGIENE

Antibiotics in the Soil Environment—Degradation and Their Impact on Microbial Activity and Diversity

(2019) Mariusz Cycoń et al.   Frontiers in Microbiology

Overview of Leafy Greens–Related Food Safety Incidents with a California Link: 1996 to 2016

(2019) KALI TURNER et al.   JOURNAL OF FOOD PROTECTION

Organic farming promotes biotic resistance to foodborne human pathogens

(2019) Matthew S. Jones et al.   JOURNAL OF APPLIED ECOLOGY

Salmonella Newport in soils amended with heat-treated poultry pellets survived longer and more readily transferred to and persisted on spinach

(2019) Manoj K Shah et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Genes, geology and germs: gut microbiota across a primate hybrid zone are explained by site soil properties, not host species

(2019) Laura E. Grieneisen et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

One Health - Cycling of diverse microbial communities as a connecting force for soil, plant, animal, human and ecosystem health

(2019) Ariena H.C. van Bruggen et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Policies for Ecological Intensification of Crop Production

(2019) Lucas A. Garibaldi et al.   TRENDS IN ECOLOGY & EVOLUTION

Inheritance of seed and rhizosphere microbial communities through plant–soil feedback and soil memory

(2019) Hyun Gi Kong et al.   Environmental Microbiology Reports

Salmonella Establishment in Agricultural Soil and Colonization of Crop Plants Depend on Soil Type and Plant Species

(2019) Sven Jechalke et al.   Frontiers in Microbiology

Initial soil microbiome composition and functioning predetermine future plant health

(2019) Zhong Wei et al.   Science Advances

The role of multiple global change factors in driving soil functions and microbial biodiversity

(2019) Matthias C. Rillig et al.   SCIENCE

Microbial functional diversity: From concepts to applications

(2019) Arthur Escalas et al.   Ecology and Evolution

Long-term no-tillage and different residue amounts alter soil microbial community composition and increase the risk of maize root rot in northeast China

(2019) Huanhuan Wang et al.   SOIL & TILLAGE RESEARCH

Impacts of soil abiotic attributes on Fusarium wilt, focusing on bananas

(2018) Ryan Orr et al.   APPLIED SOIL ECOLOGY

The Soil-Borne Legacy

(2018) Peter A.H.M. Bakker et al.   CELL

Sources and contamination routes of microbial pathogens to fresh produce during field cultivation: A review

(2018) Oluwadara Oluwaseun Alegbeleye et al.   FOOD MICROBIOLOGY

The impact of failure: unsuccessful bacterial invasions steer the soil microbial community away from the invader’s niche

(2018) C. A. Mallon et al.   ISME Journal

Ecological effects of antibiotics on natural ecosystems: A review

(2018) Paola Grenni et al.   MICROCHEMICAL JOURNAL

Soil Microbiomes Associated with Verticillium Wilt-Suppressive Broccoli and Chitin Amendments are Enriched with Potential Biocontrol Agents

(2018) Patrik Inderbitzin et al.   PHYTOPATHOLOGY

Long-term use of cover crops and no-till shift soil microbial community life strategies in agricultural soil

(2018) Radomir Schmidt et al.   PLoS One

Assessing nature's contributions to people

(2018) Sandra Díaz et al.   SCIENCE

Measuring soil sustainability via soil resilience

(2018) Marie Ludwig et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Immobilization and deactivation of pathogenic enzymes and toxic metabolites by biochar: A possible mechanism involved in soilborne disease suppression

(2018) Amit K. Jaiswal et al.   SOIL BIOLOGY & BIOCHEMISTRY

Soil quality – A critical review

(2018) Else K. Bünemann et al.   SOIL BIOLOGY & BIOCHEMISTRY

Crop rotational diversity increases disease suppressive capacity of soil microbiomes

(2018) Ariane L. Peralta et al.   Ecosphere

Fungal Biodiversity and Their Role in Soil Health

(2018) Magdalena Frąc et al.   Frontiers in Microbiology

Benefits and limitations of biochar amendment in agricultural soils: A review

(2018) Beluri Kavitha et al.   JOURNAL OF ENVIRONMENTAL MANAGEMENT

Grazing multispecies swards improves ewe and lamb performance

(2018) C. Grace et al.   Animal

Functional groups of plant pathogens in agroecosystems: a review

(2018) Damián Vega et al.   EUROPEAN JOURNAL OF PLANT PATHOLOGY

Connecting the public with soil to improve human health

(2018) Eric C. Brevik et al.   EUROPEAN JOURNAL OF SOIL SCIENCE

Antibiotic discovery: History, methods and perspectives

(2018) Guillaume André Durand et al.   INTERNATIONAL JOURNAL OF ANTIMICROBIAL AGENTS

Transcriptome analysis provides novel insights into high-soil-moisture-elevated susceptibility to Ralstonia solanacearum infection in ginger (Zingiber officinale Roscoe cv. Southwest)

(2018) Yusong Jiang et al.   PLANT PHYSIOLOGY AND BIOCHEMISTRY

Agricultural Practices Influence Salmonella Contamination and Survival in Pre-harvest Tomato Production

(2018) Ganyu Gu et al.   Frontiers in Microbiology

Importance of soil texture to the fate of pathogens introduced by irrigation with treated wastewater

(2018) Olabiyi Obayomi et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Antibiotics and antibiotic resistance from animal manures to soil: a review

(2017) W.-Y. Xie et al.   EUROPEAN JOURNAL OF SOIL SCIENCE

Soil aggregates as massively concurrent evolutionary incubators

(2017) Matthias C Rillig et al.   ISME Journal

THE EFFECT OF BIOCHAR ON PLANT DISEASES: WHAT SHOULD WE LEARN WHILE DESIGNING BIOCHAR SUBSTRATES?

(2017) Omer FRENKEL et al.   Journal of Environmental Engineering and Landscape Management

Disease Suppressive Soils: New Insights from the Soil Microbiome

(2017) Daniel Schlatter et al.   PHYTOPATHOLOGY

Effects of cover crop presence, cover crop species selection and fungicide seed treatment on corn seedling growth

(2017) Lara A. Schenck et al.   RENEWABLE AGRICULTURE AND FOOD SYSTEMS

The Ecological Role of Volatile and Soluble Secondary Metabolites Produced by Soil Bacteria

(2017) Olaf Tyc et al.   TRENDS IN MICROBIOLOGY

Valuing nature’s contributions to people: the IPBES approach

(2017) Unai Pascual et al.   Current Opinion in Environmental Sustainability

Global hotspots and correlates of emerging zoonotic diseases

(2017) Toph Allen et al.   Nature Communications

Linking the Gut Microbial Ecosystem with the Environment: Does Gut Health Depend on Where We Live?

(2017) Nishat Tasnim et al.   Frontiers in Microbiology

Different Behavior of Enteric Bacteria and Viruses in Clay and Sandy Soils after Biofertilization with Swine Digestate

(2017) Gislaine Fongaro et al.   Frontiers in Microbiology

Single and Combined Effects of Pesticide Seed Dressings and Herbicides on Earthworms, Soil Microorganisms, and Litter Decomposition

(2017) Willem Van Hoesel et al.   Frontiers in Plant Science

Pesticides, environment, and food safety

(2017) Fernando P. Carvalho   Food and Energy Security

Cover crops to increase soil microbial diversity and mitigate decline in perennial agriculture. A review

(2016) Eric Vukicevich et al.   Agronomy for Sustainable Development

Effects of Cover Crop Species and Season on Population Dynamics of Escherichia coli and Listeria innocua in Soil

(2016) Neiunna L. Reed-Jones et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

A One Health approach to antimicrobial resistance surveillance: is there a business case for it?

(2016) Kevin Queenan et al.   INTERNATIONAL JOURNAL OF ANTIMICROBIAL AGENTS

Rice Bran Amendment Suppresses Potato Common Scab by Increasing Antagonistic Bacterial Community Levels in the Rhizosphere

(2016) Tsuyoshi Tomihama et al.   PHYTOPATHOLOGY

Effect of soil type, organic matter content, bulk density and saturation on clubroot severity and biofungicide efficacy

(2016) B. D. Gossen et al.   PLANT PATHOLOGY

Soil immune responses

(2016) J. M. Raaijmakers et al.   SCIENCE

The Soil-Borne Supremacy

(2016) Corné M.J. Pieterse et al.   TRENDS IN PLANT SCIENCE

Controlling the Microbiome: Microhabitat Adjustments for Successful Biocontrol Strategies in Soil and Human Gut

(2016) Eveline Adam et al.   Frontiers in Microbiology

Gut Microbiota Diversity and Human Diseases: Should We Reintroduce Key Predators in Our Ecosystem?

(2016) Alexis Mosca et al.   Frontiers in Microbiology

Soil stewardship as a nexus between Ecosystem Services and One Health

(2016) Aidan M. Keith et al.   Ecosystem Services

Use of antibiotics in plant agriculture

(2016) V.O. STOCKWELL et al.   REVUE SCIENTIFIQUE ET TECHNIQUE-OFFICE INTERNATIONAL DES EPIZOOTIES

Effect of land use and hydrological processes on Escherichia coli concentrations in streams of tropical, humid headwater catchments

(2016) Emma J. Rochelle-Newall et al.   Scientific Reports

Soil Biodiversity and the Environment

(2015) Uffe N. Nielsen et al.   Annual Review of Environment and Resources

Organic Amendments, Beneficial Microbes, and Soil Microbiota: Toward a Unified Framework for Disease Suppression

(2015) Giuliano Bonanomi et al.   Annual Review of Phytopathology

Soil Health Paradigms and Implications for Disease Management

(2015) Robert P. Larkin   Annual Review of Phytopathology

Bioinformatics of antimicrobial resistance in the age of molecular epidemiology

(2015) Andrew G McArthur et al.   CURRENT OPINION IN MICROBIOLOGY

Cross-kingdom similarities in microbiome functions

(2015) Rodrigo Mendes et al.   ISME Journal

Soil biodiversity and human health

(2015) Diana H. Wall et al.   NATURE

Comanaging fresh produce for nature conservation and food safety

(2015) Daniel S. Karp et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Disease ecology across soil boundaries: effects of below-ground fungi on above-ground host–parasite interactions

(2015) Leiling Tao et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Microbial Invasions: The Process, Patterns, and Mechanisms

(2015) Cyrus Alexander Mallon et al.   TRENDS IN MICROBIOLOGY

The IPBES Conceptual Framework — connecting nature and people

(2015) Sandra Díaz et al.   Current Opinion in Environmental Sustainability

A Rosetta Stone for Nature’s Benefits to People

(2015) Sandra Díaz et al.   PLOS BIOLOGY

Cross-Kingdom Similarities in Microbiome Ecology and Biocontrol of Pathogens

(2015) Gabriele Berg et al.   Frontiers in Microbiology

Multiple cropping systems as drivers for providing multiple ecosystem services: from concepts to design

(2014) Sabrina Gaba et al.   Agronomy for Sustainable Development

Biodiversity and Ecosystem Functioning

(2014) David Tilman et al.   Annual Review of Ecology Evolution and Systematics

Induced Systemic Resistance by Beneficial Microbes

(2014) Corné M.J. Pieterse et al.   Annual Review of Phytopathology

Fungal diversity increases soil fungistasis and resistance to microbial invasion by a non resident species

(2014) Giuliano Bonanomi et al.   BIOLOGICAL CONTROL

Agrochemicals indirectly increase survival ofE. coliO157:H7 and indicator bacteria by reducing ecosystem services

(2014) Zachery R. Staley et al.   ECOLOGICAL APPLICATIONS

The soil resistome: a critical review on antibiotic resistance origins, ecology and dissemination potential in telluric bacteria

(2014) Joseph Nesme et al.   ENVIRONMENTAL MICROBIOLOGY

Quantitative methods for assessment of the impact of different crops on the inoculum density of Rhizoctonia solani AG2-2IIIB in soil

(2014) Barbara Boine et al.   EUROPEAN JOURNAL OF PLANT PATHOLOGY

Soil, food security and human health: a review

(2014) M. A. Oliver et al.   EUROPEAN JOURNAL OF SOIL SCIENCE

Microbiological contamination linked to implementation of good agricultural practices in the production of organic lettuce in Southern Brazil

(2014) Rochele de Quadros Rodrigues et al.   FOOD CONTROL

Fate and effects of veterinary antibiotics in soil

(2014) Sven Jechalke et al.   TRENDS IN MICROBIOLOGY

The evolution of One Health: a decade of progress and challenges for the future

(2014) E. Paul J. Gibbs   VETERINARY RECORD

Fecal bacterial losses in runoff from conventional and no-till pearl millet fertilized with broiler litter

(2013) M.B. Jenkins et al.   AGRICULTURAL WATER MANAGEMENT

Chitin Amendment Increases Soil Suppressiveness toward Plant Pathogens and Modulates the Actinobacterial and Oxalobacteraceal Communities in an Experimental Agricultural Field

(2013) Mariana Silvia Cretoiu et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Fate ofEscherichia coliO157:H7 andSalmonella entericain the manure-amended soil-plant ecosystem of fresh vegetable crops: A review

(2013) Duncan Ongeng et al.   CRITICAL REVIEWS IN MICROBIOLOGY

Agricultural soils, pesticides and microbial diversity

(2013) Carsten Suhr Jacobsen et al.   CURRENT OPINION IN BIOTECHNOLOGY

Biotic and Abiotic Soil Properties Influence Survival of Listeria monocytogenes in Soil

(2013) Aude Locatelli et al.   PLoS One

Compost: Its role, mechanism and impact on reducing soil-borne plant diseases

(2013) C.M. Mehta et al.   WASTE MANAGEMENT

Turnover of soil bacterial diversity driven by wide-scale environmental heterogeneity

(2013) L. Ranjard et al.   Nature Communications

Gut and Root Microbiota Commonalities

(2012) Shamayim T. Ramírez-Puebla et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Soil-Related Bacterial and Fungal Infections

(2012) D. J. Baumgardner   Journal of the American Board of Family Medicine

Recover the lost art of drug discovery

(2012) Kim Lewis   NATURE

Soil Suppressiveness to Fusarium Disease: Shifts in Root Microbiome Associated with Reduction of Pathogen Root Colonization

(2012) Eyal Klein et al.   PHYTOPATHOLOGY

Microbial diversity determines the invasion of soil by a bacterial pathogen

(2012) J. D. van Elsas et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Environmental biodiversity, human microbiota, and allergy are interrelated

(2012) I. Hanski et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Linking soil biodiversity and agricultural soil management

(2012) Sören Thiele-Bruhn et al.   Current Opinion in Environmental Sustainability

Comparative Genomics of Plant-Associated Pseudomonas spp.: Insights into Diversity and Inheritance of Traits Involved in Multitrophic Interactions

(2012) Joyce E. Loper et al.   PLoS Genetics

Fundamentals of Microbial Community Resistance and Resilience

(2012) Ashley Shade et al.   Frontiers in Microbiology

A Coevolutionary Framework for Managing Disease-Suppressive Soils

(2011) Linda L. Kinkel et al.   Annual Review of Phytopathology

Meeting the demand for crop production: the challenge of yield decline in crops grown in short rotations

(2011) Amanda J. Bennett et al.   BIOLOGICAL REVIEWS

Natural immunity

(2011) Leena von Hertzen et al.   EMBO REPORTS

Deciphering the Rhizosphere Microbiome for Disease-Suppressive Bacteria

(2011) R. Mendes et al.   SCIENCE

Effect of pesticide application on soil microorganisms

(2011) Anu Kalia et al.   Archives of Agronomy and Soil Science

Small amounts of pesticides reaching target insects

(2011) David Pimentel et al.   ENVIRONMENT DEVELOPMENT AND SUSTAINABILITY

Effect of pesticides on soil microbial community

(2010) Chi-Chu Lo   JOURNAL OF ENVIRONMENTAL SCIENCE AND HEALTH PART B-PESTICIDES FOOD CONTAMINANTS AND AGRICULTURAL WASTES

Pathogens and antibiotic residues in animal manures and hygienic and ecological risks related to subsequent land application

(2009) Jan Venglovsky et al.   BIORESOURCE TECHNOLOGY

Management implications of conservation tillage and poultry litter use for Southern Piedmont USA cropping systems

(2009) Dinku M. Endale et al.   NUTRIENT CYCLING IN AGROECOSYSTEMS

Identifying the characteristics of organic soil amendments that suppress soilborne plant diseases

(2009) Giuliano Bonanomi et al.   SOIL BIOLOGY & BIOCHEMISTRY

Role of nutrients in controlling plant diseases in sustainable agriculture. A review

(2008) Christos Dordas   Agronomy for Sustainable Development

Soil health in agricultural systems

(2007) M.G Kibblewhite et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES