Gut and Root Microbiota Commonalities

Diversity of gut methanogens in herbivorous animals

(2012) B. St-Pierre et al.   Animal

Effects of Antimicrobial Peptides on Methanogenic Archaea

(2012) C. Bang et al.   ANTIMICROBIAL AGENTS AND CHEMOTHERAPY

Remarkable Ability of Pandoraea pnomenusa B356 Biphenyl Dioxygenase To Metabolize Simple Flavonoids

(2012) Thi Thanh My Pham et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Microbial community structure elucidates performance of Glyceria maxima plant microbial fuel cell

(2012) Ruud A. Timmers et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Characterization of the first alginolytic operons in a marine bacterium: from their emergence in marine Flavobacteriia to their independent transfers to marine Proteobacteria and human gut Bacteroides

(2012) François Thomas et al.   ENVIRONMENTAL MICROBIOLOGY

CRISPR targeting reveals a reservoir of common phages associated with the human gut microbiome

(2012) A. Stern et al.   GENOME RESEARCH

Draft Genome Sequence of Commensalibacter intestini A911T, a Symbiotic Bacterium Isolated from Drosophila melanogaster Intestine

(2012) E.-K. Kim et al.   JOURNAL OF BACTERIOLOGY

Molecular typing of fecal eukaryotic microbiota of human infants and their respective mothers

(2012) Prashant K Pandey et al.   JOURNAL OF BIOSCIENCES

Mycorrhiza-Induced Resistance and Priming of Plant Defenses

(2012) Sabine C. Jung et al.   JOURNAL OF CHEMICAL ECOLOGY

Defining the core Arabidopsis thaliana root microbiome

(2012) Derek S. Lundberg et al.   NATURE

Human gut microbiome viewed across age and geography

(2012) Tanya Yatsunenko et al.   NATURE

Rhizobial extrachromosomal replicon variability, stability and expression in natural niches

(2012) Martha G. López-Guerrero et al.   PLASMID

Hypervariable loci in the human gut virome

(2012) S. Minot et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Is It Time for a Metagenomic Basis of Therapeutics?

(2012) H. J. Haiser et al.   SCIENCE

The Application of Ecological Theory Toward an Understanding of the Human Microbiome

(2012) E. K. Costello et al.   SCIENCE

Ageing of the human metaorganism: the microbial counterpart

(2011) Elena Biagi et al.   AGE

Impact of root exudates and plant defense signaling on bacterial communities in the rhizosphere. A review

(2011) Rogier F. Doornbos et al.   Agronomy for Sustainable Development

Microbially Mediated Plant Functional Traits

(2011) Maren L. Friesen et al.   Annual Review of Ecology Evolution and Systematics

The Rules of Engagement in the Legume-Rhizobial Symbiosis

(2011) Giles E.D. Oldroyd et al.   Annual Review of Genetics

Controlled Gene Expression in Bifidobacteria by Use of a Bile-Responsive Element

(2011) Lorena Ruiz et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Multiple origins of endosymbiosis within the Enterobacteriaceae (γ-Proteobacteria): convergence of complex phylogenetic approaches

(2011) Filip Husník et al.   BMC BIOLOGY

The Intestinal Microbiota Affect Central Levels of Brain-Derived Neurotropic Factor and Behavior in Mice

(2011) Premysl Bercik et al.   GASTROENTEROLOGY

The human gut virome: Inter-individual variation and dynamic response to diet

(2011) S. Minot et al.   GENOME RESEARCH

Bacteroidales ectosymbionts of gut flagellates shape the nitrogen-fixing community in dry-wood termites

(2011) Mahesh S Desai et al.   ISME Journal

Phylogenetic analysis of the fecal microbial community in herbivorous land and marine iguanas of the Galápagos Islands using 16S rRNA-based pyrosequencing

(2011) Pei-Ying Hong et al.   ISME Journal

Major players on the microbial stage: why archaea are important

(2011) K. F. Jarrell et al.   MICROBIOLOGY-SGM

Enterotypes of the human gut microbiome

(2011) Manimozhiyan Arumugam et al.   NATURE

Extreme genome reduction in symbiotic bacteria

(2011) John P. McCutcheon et al.   NATURE REVIEWS MICROBIOLOGY

Conservation and Diversity of Seed Associated Endophytes in Zea across Boundaries of Evolution, Ethnography and Ecology

(2011) David Johnston-Monje et al.   PLoS One

Characterization of the Diversity and Temporal Stability of Bacterial Communities in Human Milk

(2011) Katherine M. Hunt et al.   PLoS One

Transkingdom signaling based on bacterial cyclodipeptides with auxin activity in plants

(2011) R. Ortiz-Castro et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Normal gut microbiota modulates brain development and behavior

(2011) R. D. Heijtz et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Diet Drives Convergence in Gut Microbiome Functions Across Mammalian Phylogeny and Within Humans

(2011) B. D. Muegge et al.   SCIENCE

The Antibacterial Lectin RegIII  Promotes the Spatial Segregation of Microbiota and Host in the Intestine

(2011) S. Vaishnava et al.   SCIENCE

Successful Transmission of a Retrovirus Depends on the Commensal Microbiota

(2011) M. Kane et al.   SCIENCE

Drosophila Microbiome Modulates Host Developmental and Metabolic Homeostasis via Insulin Signaling

(2011) S. C. Shin et al.   SCIENCE

The Impact of a Consortium of Fermented Milk Strains on the Gut Microbiome of Gnotobiotic Mice and Monozygotic Twins

(2011) N. P. McNulty et al.   Science Translational Medicine

Microbial Eukaryotes in the Human Microbiome: Ecology, Evolution, and Future Directions

(2011) Laura Wegener Parfrey et al.   Frontiers in Microbiology

Adaptation of Rhizobium leguminosarum to pea, alfalfa and sugar beet rhizospheres investigated by comparative transcriptomics

(2011) Vinoy K Ramachandran et al.   GENOME BIOLOGY

Perception and Degradation ofN-Acyl Homoserine Lactone Quorum Sensing Signals by Mammalian and Plant Cells

(2010) Max Teplitski et al.   CHEMICAL REVIEWS

Postprandial remodeling of the gut microbiota in Burmese pythons

(2010) Elizabeth K Costello et al.   ISME Journal

Characterisation of microbial communities colonising the hyphal surfaces of arbuscular mycorrhizal fungi

(2010) Tanja R Scheublin et al.   ISME Journal

Spatial organization of intestinal microbiota in the mouse ascending colon

(2010) Gerardo M Nava et al.   ISME Journal

An ancient but promiscuous host–symbiont association between Burkholderia gut symbionts and their heteropteran hosts

(2010) Yoshitomo Kikuchi et al.   ISME Journal

Viruses in the faecal microbiota of monozygotic twins and their mothers

(2010) Alejandro Reyes et al.   NATURE

Human mucosal in vivo transcriptome responses to three lactobacilli indicate how probiotics may modulate human cellular pathways

(2010) P. van Baarlen et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Phaseolus vulgaris seed-borne endophytic community with novel bacterial species such as Rhizobium endophyticum sp. nov.

(2010) Aline López-López et al.   SYSTEMATIC AND APPLIED MICROBIOLOGY

The Discussion Goes on: What Is the Role ofEuryarchaeotain Humans?

(2010) H.-P. Horz et al.   ARCHAEA-AN INTERNATIONAL MICROBIOLOGICAL JOURNAL

Human intestinal microbiota and healthy ageing

(2009) Kirsti Tiihonen et al.   AGEING RESEARCH REVIEWS

Viruses in soils: morphological diversity and abundance in the rhizosphere

(2009) M.M. Swanson et al.   ANNALS OF APPLIED BIOLOGY

Bile-Inducible Efflux Transporter from Bifidobacterium longum NCC2705, Conferring Bile Resistance

(2009) M. Gueimonde et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Rhizosphere chemical dialogues: plant–microbe interactions

(2009) Dayakar V Badri et al.   CURRENT OPINION IN BIOTECHNOLOGY

Bacterial and Host Interactions of Oral Streptococci

(2009) Jens Kreth et al.   DNA AND CELL BIOLOGY

Rock-degrading endophytic bacteria in cacti

(2009) M. Esther Puente et al.   ENVIRONMENTAL AND EXPERIMENTAL BOTANY

Bacterial-modulated host immunity and stem cell activation for gut homeostasis

(2009) W.-J. Lee   GENES & DEVELOPMENT

Methylophilus rhizosphaerae sp. nov., a restricted facultative methylotroph isolated from rice rhizosphere soil

(2009) M. Madhaiyan et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

Microbiomic analysis of the bifidobacterial population in the human distal gut

(2009) Francesca Turroni et al.   ISME Journal

Transcriptomic Analysis of Rhizobium leguminosarum Biovar viciae in Symbiosis with Host Plants Pisum sativum and Vicia cracca

(2009) R. Karunakaran et al.   JOURNAL OF BACTERIOLOGY

The cin and rai Quorum-Sensing Regulatory Systems in Rhizobium leguminosarum Are Coordinated by ExpR and CinS, a Small Regulatory Protein Coexpressed with CinI

(2009) A. Edwards et al.   JOURNAL OF BACTERIOLOGY

Intestinal Microbial Ecology in Premature Infants Assessed with Non–Culture-Based Techniques

(2009) Maka Mshvildadze et al.   JOURNAL OF PEDIATRICS

The Effect of Diet on the Human Gut Microbiome: A Metagenomic Analysis in Humanized Gnotobiotic Mice

(2009) P. J. Turnbaugh et al.   Science Translational Medicine

Molecular evaluation of the human gut methanogenic archaeal microbiota reveals an age-associated increase of the diversity

(2009) Agnès Mihajlovski et al.   Environmental Microbiology Reports

Isolation of Bifidobacteria from Breast Milk and Assessment of the Bifidobacterial Population by PCR-Denaturing Gradient Gel Electrophoresis and Quantitative Real-Time PCR

(2008) R. Martin et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Phylogenetic Characterization of Two Novel Commensal Bacteria Involved with Innate Immune Homeostasis in Drosophila melanogaster

(2008) S. W. Roh et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Paternal transmission of symbiotic bacteria in malaria vectors

(2008) Claudia Damiani et al.   CURRENT BIOLOGY

Comparative Genome Analysis of Lactobacillus reuteri and Lactobacillus fermentum Reveal a Genomic Island for Reuterin and Cobalamin Production

(2008) H. Morita et al.   DNA RESEARCH

Mutations in lipopolysaccharide biosynthetic genes impair maize rhizosphere and root colonization of Rhizobium tropici CIAT899

(2008) Ernesto Ormeño-Orrillo et al.   ENVIRONMENTAL MICROBIOLOGY

The gastrointestinal microbiota as a site for the biotransformation of drugs

(2008) Tiago Sousa et al.   INTERNATIONAL JOURNAL OF PHARMACEUTICS

In vitro evaluation of the probiotic properties of human intestinal Bifidobacterium species and selection of new probiotic candidates

(2008) S. Delgado et al.   JOURNAL OF APPLIED MICROBIOLOGY

Advances in Clinical Use of Probiotics

(2008) Martin H. Floch et al.   JOURNAL OF CLINICAL GASTROENTEROLOGY

Bacterial, archaeal, and eukaryal diversity in the intestines of Korean people

(2008) Young-Do Nam et al.   JOURNAL OF MICROBIOLOGY

Arbuscular mycorrhiza: the mother of plant root endosymbioses

(2008) Martin Parniske   NATURE REVIEWS MICROBIOLOGY

Polysaccharide utilization by gut bacteria: potential for new insights from genomic analysis

(2008) Harry J. Flint et al.   NATURE REVIEWS MICROBIOLOGY

The rhizosphere: a playground and battlefield for soilborne pathogens and beneficial microorganisms

(2008) Jos M. Raaijmakers et al.   PLANT AND SOIL

Plant-driven selection of microbes

(2008) Anton Hartmann et al.   PLANT AND SOIL

Root-Secreted Malic Acid Recruits Beneficial Soil Bacteria

(2008) T. Rudrappa et al.   PLANT PHYSIOLOGY

Is meconium from healthy newborns actually sterile?

(2008) Esther Jiménez et al.   RESEARCH IN MICROBIOLOGY

Evolution of Mammals and Their Gut Microbes

(2008) R. E. Ley et al.   SCIENCE

Innate Immune Homeostasis by the Homeobox Gene Caudal and Commensal-Gut Mutualism in Drosophila

(2008) J.-H. Ryu et al.   SCIENCE

Symbioses of flagellates and prokaryotes in the gut of lower termites

(2008) Moriya Ohkuma   TRENDS IN MICROBIOLOGY

Multifaceted transcriptional regulation of the murine intestinal mucus layer by endogenous microbiota

(2007) Elena M. Comelli et al.   GENOMICS