IUPred3: prediction of protein disorder enhanced with unambiguous experimental annotation and visualization of evolutionary conservation

Critical assessment of protein intrinsic disorder prediction

(2021) Marco Necci et al.   NATURE METHODS

Ancient Evolutionary Origin of Intrinsically Disordered Cancer Risk Regions

(2020) Mátyás Pajkos et al.   Biomolecules

MobiDB-lite 3.0: fast consensus annotation of intrinsic disorder flavors in proteins

(2020) Marco Necci et al.   BIOINFORMATICS

RCSB Protein Data Bank: powerful new tools for exploring 3D structures of biological macromolecules for basic and applied research and education in fundamental biology, biomedicine, biotechnology, bioengineering and energy sciences

(2020) Stephen K Burley et al.   NUCLEIC ACIDS RESEARCH

MobiDB: intrinsically disordered proteins in 2021

(2020) Damiano Piovesan et al.   NUCLEIC ACIDS RESEARCH

DEPICTER: Intrinsic Disorder and Disorder Function Prediction Server

(2019) Amita Barik et al.   JOURNAL OF MOLECULAR BIOLOGY

IUPred2A: context-dependent prediction of protein disorder as a function of redox state and protein binding

(2018) Bálint Mészáros et al.   NUCLEIC ACIDS RESEARCH

Prediction of protein disorder based on IUPred

(2017) Zsuzsanna Dosztányi   PROTEIN SCIENCE

Novel linear motif filtering protocol reveals the role of the LC8 dynein light chain in the Hippo pathway

(2017) Gábor Erdős et al.   PLoS Computational Biology

Standardized benchmarking in the quest for orthologs

(2016) Adrian M Altenhoff et al.   NATURE METHODS

ProViz—a web-based visualization tool to investigate the functional and evolutionary features of protein sequences

(2016) Peter Jehl et al.   NUCLEIC ACIDS RESEARCH

DisCons: a novel tool to quantify and classify evolutionary conservation of intrinsic protein disorder

(2015) Mihaly Varadi et al.   BMC BIOINFORMATICS

High-throughput prediction of RNA, DNA and protein binding regions mediated by intrinsic disorder

(2015) Zhenling Peng et al.   NUCLEIC ACIDS RESEARCH

Conditionally and Transiently Disordered Proteins: Awakening Cryptic Disorder To Regulate Protein Function

(2014) Ursula Jakob et al.   CHEMICAL REVIEWS

Classification of Intrinsically Disordered Regions and Proteins

(2014) Robin van der Lee et al.   CHEMICAL REVIEWS

PhosphoSitePlus, 2014: mutations, PTMs and recalibrations

(2014) Peter V. Hornbeck et al.   NUCLEIC ACIDS RESEARCH

IDEAL in 2014 illustrates interaction networks composed of intrinsically disordered proteins and their binding partners

(2013) Satoshi Fukuchi et al.   NUCLEIC ACIDS RESEARCH

Assessment of protein disorder region predictions in CASP10

(2013) Bohdan Monastyrskyy et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

MoRFpred, a computational tool for sequence-based prediction and characterization of short disorder-to-order transitioning binding regions in proteins

(2012) Fatemeh Miri Disfani et al.   BIOINFORMATICS

Phase transitions in the assembly of multivalent signalling proteins

(2012) Pilong Li et al.   NATURE

SLiMPrints: conservation-based discovery of functional motif fingerprints in intrinsically disordered protein regions

(2012) Norman E. Davey et al.   NUCLEIC ACIDS RESEARCH

Solution structure of Rap1 BRCT domain from Saccharomyces cerevisiae reveals a novel fold

(2010) Wen Zhang et al.   BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS

Close encounters of the third kind: disordered domains and the interactions of proteins

(2009) Peter Tompa et al.   BIOESSAYS

Masking residues using context-specific evolutionary conservation significantly improves short linear motif discovery

(2009) Norman E. Davey et al.   BIOINFORMATICS

Jalview Version 2--a multiple sequence alignment editor and analysis workbench

(2009) A. M. Waterhouse et al.   BIOINFORMATICS

Comparing Models of Evolution for Ordered and Disordered Proteins

(2009) C. J. Brown et al.   MOLECULAR BIOLOGY AND EVOLUTION

The unfoldomics decade: an update on intrinsically disordered proteins

(2008) A Keith Dunker et al.   BMC GENOMICS

Yeast Rap1 contributes to genomic integrity by activating DNA damage repair genes

(2008) Raghuvir S Tomar et al.   EMBO JOURNAL