MobiDB: intrinsically disordered proteins in 2021

The Feature-Viewer: a visualization tool for positional annotations on a sequence

(2020) Lisanna Paladin et al.   BIOINFORMATICS

Sequence-based determinants and prediction of fuzzy interactions in protein complexes

(2020) Marton Miskei et al.   JOURNAL OF MOLECULAR BIOLOGY

Sequence-based prediction of protein binding mode landscapes

(2020) Attila Horvath et al.   PLoS Computational Biology

Experimentally Determined Long Intrinsically Disordered Protein Regions Are Now Abundant in the Protein Data Bank

(2020) Alexander Miguel Monzon et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Ensembles from Ordered and Disordered Proteins Reveal Similar Structural Constraints during Evolution

(2019) Julia Marchetti et al.   JOURNAL OF MOLECULAR BIOLOGY

LLPSDB: a database of proteins undergoing liquid–liquid phase separation in vitro

(2019) Qian Li et al.   NUCLEIC ACIDS RESEARCH

Patterns of Dynamics Comprise a Conserved Evolutionary Trait

(2019) F. Zsolyomi et al.   JOURNAL OF MOLECULAR BIOLOGY

PhaSepDB: a database of liquid–liquid phase separation related proteins

(2019) Kaiqiang You et al.   NUCLEIC ACIDS RESEARCH

Relationship of Sequence and Phase Separation in Protein Low-Complexity Regions

(2018) Erik W. Martin et al.   BIOCHEMISTRY

Complex regulatory mechanisms mediated by the interplay of multiple post-translational modifications

(2018) Veronika Csizmok et al.   CURRENT OPINION IN STRUCTURAL BIOLOGY

IUPred2A: context-dependent prediction of protein disorder as a function of redox state and protein binding

(2018) Bálint Mészáros et al.   NUCLEIC ACIDS RESEARCH

Protein Phase Separation: A New Phase in Cell Biology

(2018) Steven Boeynaems et al.   TRENDS IN CELL BIOLOGY

UniProt: a worldwide hub of protein knowledge

(2018)   NUCLEIC ACIDS RESEARCH

The PRIDE database and related tools and resources in 2019: improving support for quantification data

(2018) Yasset Perez-Riverol et al.   NUCLEIC ACIDS RESEARCH

The Pfam protein families database in 2019

(2018) Sara El-Gebali et al.   NUCLEIC ACIDS RESEARCH

InterPro in 2019: improving coverage, classification and access to protein sequence annotations

(2018) Alex L Mitchell et al.   NUCLEIC ACIDS RESEARCH

Affinity and specificity of motif-based protein–protein interactions

(2018) Ylva Ivarsson et al.   CURRENT OPINION IN STRUCTURAL BIOLOGY

Biomolecular condensates: organizers of cellular biochemistry

(2017) Salman F. Banani et al.   NATURE REVIEWS MOLECULAR CELL BIOLOGY

PDBe: towards reusable data delivery infrastructure at protein data bank in Europe

(2017) Saqib Mir et al.   NUCLEIC ACIDS RESEARCH

Gene3D: Extensive prediction of globular domains in proteins

(2017) Tony E Lewis et al.   NUCLEIC ACIDS RESEARCH

The Proteins API: accessing key integrated protein and genome information

(2017) Andrew Nightingale et al.   NUCLEIC ACIDS RESEARCH

Phase separation in biology; functional organization of a higher order

(2016) Diana M. Mitrea et al.   Cell Communication and Signaling

Modulation of Intrinsically Disordered Protein Function by Post-translational Modifications

(2016) Alaji Bah et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

FuzDB: database of fuzzy complexes, a tool to develop stochastic structure-function relationships for protein complexes and higher-order assemblies

(2016) Marton Miskei et al.   NUCLEIC ACIDS RESEARCH

DisProt 7.0: a major update of the database of disordered proteins

(2016) Damiano Piovesan et al.   NUCLEIC ACIDS RESEARCH

The RING 2.0 web server for high quality residue interaction networks

(2016) Damiano Piovesan et al.   NUCLEIC ACIDS RESEARCH

Large-scale analysis of intrinsic disorder flavors and associated functions in the protein sequence universe

(2016) Marco Necci et al.   PROTEIN SCIENCE

Short linear motifs – ex nihilo evolution of protein regulation

(2015) Norman E. Davey et al.   Cell Communication and Signaling

Intrinsically disordered proteins in cellular signalling and regulation

(2015) Peter E. Wright et al.   NATURE REVIEWS MOLECULAR CELL BIOLOGY

Computational Identification of MoRFs in Protein Sequences Using Hierarchical Application of Bayes Rule

(2015) Nawar Malhis et al.   PLoS One

DISOPRED3: precise disordered region predictions with annotated protein-binding activity

(2014) David T. Jones et al.   BIOINFORMATICS

Classification of Intrinsically Disordered Regions and Proteins

(2014) Robin van der Lee et al.   CHEMICAL REVIEWS

A Million Peptide Motifs for the Molecular Biologist

(2014) Peter Tompa et al.   MOLECULAR CELL

Folding of an intrinsically disordered protein by phosphorylation as a regulatory switch

(2014) Alaji Bah et al.   NATURE

pE-DB: a database of structural ensembles of intrinsically disordered and of unfolded proteins

(2013) Mihaly Varadi et al.   NUCLEIC ACIDS RESEARCH

IDEAL in 2014 illustrates interaction networks composed of intrinsically disordered proteins and their binding partners

(2013) Satoshi Fukuchi et al.   NUCLEIC ACIDS RESEARCH

Conformations of intrinsically disordered proteins are influenced by linear sequence distributions of oppositely charged residues

(2013) R. K. Das et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

From protein sequence to dynamics and disorder with DynaMine

(2013) Elisa Cilia et al.   Nature Communications

Motif switches: decision-making in cell regulation

(2012) Kim Van Roey et al.   CURRENT OPINION IN STRUCTURAL BIOLOGY

Interactions via intrinsically disordered regions: What kind of motifs?

(2012) Rita Pancsa et al.   IUBMB LIFE

Linear motifs: lost in (pre)translation

(2012) Robert J. Weatheritt et al.   TRENDS IN BIOCHEMICAL SCIENCES

ESpritz: accurate and fast prediction of protein disorder

(2011) Ian Walsh et al.   BIOINFORMATICS

How viruses hijack cell regulation

(2010) Norman E. Davey et al.   TRENDS IN BIOCHEMICAL SCIENCES

ANCHOR: web server for predicting protein binding regions in disordered proteins

(2009) Z. Dosztanyi et al.   BIOINFORMATICS

Prediction of Protein Binding Regions in Disordered Proteins

(2009) Bálint Mészáros et al.   PLoS Computational Biology

EnsemblCompara GeneTrees: Complete, duplication-aware phylogenetic trees in vertebrates

(2008) A. J. Vilella et al.   GENOME RESEARCH