Generation of unequal nuclear genotype proportions in Rhizophagus irregularis progeny causes allelic imbalance in gene transcription

Host identity influences nuclear dynamics in arbuscular mycorrhizal fungi

(2021) Vasilis Kokkoris et al.   CURRENT BIOLOGY

Genetic variation and evolutionary history of a mycorrhizal fungus regulate the currency of exchange in symbiosis with the food security crop cassava

(2020) Romain Savary et al.   ISME Journal

Gene duplication in the honeybee: Patterns of DNA methylation, gene expression, and genomic environment

(2020) Carl J Dyson et al.   MOLECULAR BIOLOGY AND EVOLUTION

Parasexual and Sexual Reproduction in Arbuscular Mycorrhizal Fungi: Room for Both

(2020) Gökalp Yildirir et al.   TRENDS IN MICROBIOLOGY

Coexistence of genetically different Rhizophagus irregularis isolates induces genes involved in a putative fungal mating response

(2020) Ivan D. Mateus et al.   ISME Journal

Nuclear Dynamics in the Arbuscular Mycorrhizal Fungi

(2020) Vasilis Kokkoris et al.   TRENDS IN PLANT SCIENCE

Genome evolution in Oryza allopolyploids of various ages: Insights into the process of diploidization

(2020) Xinhui Zou et al.   PLANT JOURNAL

Genetically Different Isolates of the Arbuscular Mycorrhizal Fungus Rhizophagus irregularis Induce Differential Responses to Stress in Cassava

(2020) Ricardo Peña et al.   Frontiers in Plant Science

Estimating the Fitness Effect of Deleterious Mutations During the Two Phases of the Life Cycle: A New Method Applied to the Root-Rot Fungus Heterobasidion parviporum

(2019) Pierre-Henri Clergeot et al.   GENETICS

Dual RNA-seq reveals large-scale non-conserved genotype × genotype-specific genetic reprograming and molecular crosstalk in the mycorrhizal symbiosis

(2019) Ivan D. Mateus et al.   ISME Journal

Evolutionary maintenance of genomic diversity within arbuscular mycorrhizal fungi

(2019) Thomas W. Scott et al.   Ecology and Evolution

Climatic controls of decomposition drive the global biogeography of forest-tree symbioses

(2019) B. S. Steidinger et al.   NATURE

Comment on 'Single nucleus sequencing reveals evidence of inter-nucleus recombination in arbuscular mycorrhizal fungi'

(2019) Benjamin Auxier et al.   eLife

Progress on Molecular Genetics and Manipulation of Rust Fungi

(2019) Guus Bakkeren et al.   PHYTOPATHOLOGY

Investigating unexplained genetic variation and its expression in the arbuscular mycorrhizal fungus Rhizophagus irregularis: A comparison of whole genome and RAD sequencing data

(2019) Frédéric G. Masclaux et al.   PLoS One

Variation in allele frequencies at the bg112 locus reveals unequal inheritance of nuclei in a dikaryotic isolate of the fungus Rhizophagus irregularis

(2018) Frédéric G. Masclaux et al.   MYCORRHIZA

High intraspecific genome diversity in the model arbuscular mycorrhizal symbiont Rhizophagus irregularis

(2018) Eric C. H. Chen et al.   NEW PHYTOLOGIST

Evolutionary history of mycorrhizal symbioses and global host plant diversity

(2018) Mark C. Brundrett et al.   NEW PHYTOLOGIST

Nucleus-specific expression in the multinuclear mushroom-forming fungusAgaricus bisporusreveals different nuclear regulatory programs

(2018) Thies Gehrmann et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Altered access to beneficial mutations slows adaptation and biases fixed mutations in diploids

(2018) Daniel A. Marad et al.   Nature Ecology & Evolution

Strong succession in arbuscular mycorrhizal fungal communities

(2018) Cheng Gao et al.   ISME Journal

Genomic encoding of transcriptional burst kinetics

(2018) Anton J. M. Larsson et al.   NATURE

eggNOG 5.0: a hierarchical, functionally and phylogenetically annotated orthology resource based on 5090 organisms and 2502 viruses

(2018) Jaime Huerta-Cepas et al.   NUCLEIC ACIDS RESEARCH

Within-species phylogenetic relatedness of a common mycorrhizal fungus affects evenness in plant communities through effects on dominant species

(2018) Romain Savary et al.   PLoS One

Single nucleus sequencing reveals evidence of inter-nucleus recombination in arbuscular mycorrhizal fungi

(2018) Eric CH Chen et al.   eLife

A population genomics approach shows widespread geographical distribution of cryptic genomic forms of the symbiotic fungus Rhizophagus irregularis

(2017) Romain Savary et al.   ISME Journal

Dynamic and Antagonistic Allele-Specific Epigenetic Modifications Controlling the Expression of Imprinted Genes in Maize Endosperm

(2017) Xiaomei Dong et al.   Molecular Plant

Cost-efficient production of in vitro Rhizophagus irregularis

(2017) Pawel Rosikiewicz et al.   MYCORRHIZA

Arbuscular mycorrhiza-specific enzymes FatM and RAM2 fine-tune lipid biosynthesis to promote development of arbuscular mycorrhiza

(2017) Armando Bravo et al.   NEW PHYTOLOGIST

Lipid transfer from plants to arbuscular mycorrhiza fungi

(2017) Andreas Keymer et al.   eLife

Population genomics reveals that within-fungus polymorphism is common and maintained in populations of the mycorrhizal fungus Rhizophagus irregularis

(2016) Tania Wyss et al.   ISME Journal

Arbuscular mycorrhizal fungi communities from tropical Africa reveal strong ecological structure

(2016) Susana Rodríguez-Echeverría et al.   NEW PHYTOLOGIST

Whole Genome Analysis of 132 Clinical Saccharomyces cerevisiae Strains Reveals Extensive Ploidy Variation

(2016) Yuan O. Zhu et al.   G3-Genes Genomes Genetics

Evidence for the sexual origin of heterokaryosis in arbuscular mycorrhizal fungi

(2016) Jeanne Ropars et al.   Nature Microbiology

Global assessment of arbuscular mycorrhizal fungus diversity reveals very low endemism

(2015) J. Davison et al.   SCIENCE

Trimmomatic: a flexible trimmer for Illumina sequence data

(2014) Anthony M. Bolger et al.   BIOINFORMATICS

Single Nucleus Genome Sequencing Reveals High Similarity among Nuclei of an Endomycorrhizal Fungus

(2014) Kui Lin et al.   PLoS Genetics

Rapid genotypic change and plasticity in arbuscular mycorrhizal fungi is caused by a host shift and enhanced by segregation

(2013) Caroline Angelard et al.   ISME Journal

The In Vitro Mass-Produced Model Mycorrhizal Fungus, Rhizophagus irregularis, Significantly Increases Yields of the Globally Important Food Security Crop Cassava

(2013) Isabel Ceballos et al.   PLoS One

Genome of an arbuscular mycorrhizal fungus provides insight into the oldest plant symbiosis

(2013) E. Tisserant et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

RSeQC: quality control of RNA-seq experiments

(2012) Liguo Wang et al.   BIOINFORMATICS

STAR: ultrafast universal RNA-seq aligner

(2012) Alexander Dobin et al.   BIOINFORMATICS

Genome sequence of dwarf birch (Betula nana) and cross-species RAD markers

(2012) Nian Wang et al.   MOLECULAR ECOLOGY

Significant genetic and phenotypic changes arising from clonal growth of a single spore of an arbuscular mycorrhizal fungus over multiple generations

(2012) Martine O. Ehinger et al.   NEW PHYTOLOGIST

Carbon availability triggers fungal nitrogen uptake and transport in arbuscular mycorrhizal symbiosis

(2012) C. R. Fellbaum et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Quality control and preprocessing of metagenomic datasets

(2011) R. Schmieder et al.   BIOINFORMATICS

Stacks : Building and Genotyping Loci De Novo From Short-Read Sequences

(2011) Julian M. Catchen et al.   G3-Genes Genomes Genetics

TagCleaner: Identification and removal of tag sequences from genomic and metagenomic datasets

(2010) Robert Schmieder et al.   BMC BIOINFORMATICS

Segregation in a Mycorrhizal Fungus Alters Rice Growth and Symbiosis-Specific Gene Transcription

(2010) Caroline Angelard et al.   CURRENT BIOLOGY

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

Fast and accurate short read alignment with Burrows-Wheeler transform

(2009) H. Li et al.   BIOINFORMATICS

Nonself vegetative fusion and genetic exchange in the arbuscular mycorrhizal fungus Glomus intraradices

(2008) Daniel Croll et al.   NEW PHYTOLOGIST