Molecular organization and comparative analysis of chromosome 5B of the wild wheat ancestor Triticum dicoccoides

Next-generation sequencing of flow-sorted wheat chromosome 5D reveals lineage-specific translocations and widespread gene duplications

(2014) Stuart J Lucas et al.   BMC GENOMICS

History and current status of wheat miRNAs using next-generation sequencing and their roles in development and stress

(2014) H. Budak et al.   Briefings in Functional Genomics

Contrasting evolutionary trajectories of multiple retrotransposons following independent allopolyploidy in wild wheats

(2014) Natacha Senerchia et al.   NEW PHYTOLOGIST

Sequencing chromosome 5D ofAegilops tauschiiand comparison with its allopolyploid descendant bread wheat (Triticum aestivum)

(2014) Bala A. Akpinar et al.   PLANT BIOTECHNOLOGY JOURNAL

Family-Wide Survey of miR169s and NF-YAs and Their Expression Profiles Response to Abiotic Stress in Maize Roots

(2014) Mingda Luan et al.   PLoS One

Fine Physical and Genetic Mapping of Powdery Mildew Resistance Gene MlIW172 Originating from Wild Emmer (Triticum dicoccoides)

(2014) Shuhong Ouyang et al.   PLoS One

Silencing of a metaphase I-specific gene results in a phenotype similar to that of the Pairing homeologous 1 (Ph1) gene mutations

(2014) Ramanjot Bhullar et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Ancient hybridizations among the ancestral genomes of bread wheat

(2014) T. Marcussen et al.   SCIENCE

A chromosome-based draft sequence of the hexaploid bread wheat (Triticum aestivum) genome

(2014) et al.   SCIENCE

Genome interplay in the grain transcriptome of hexaploid bread wheat

(2014) M. Pfeifer et al.   SCIENCE

Structural and functional partitioning of bread wheat chromosome 3B

(2014) F. Choulet et al.   SCIENCE

Development of IRAP- and REMAP-derived SCAR markers for marker-assisted selection of the stripe rust resistance gene Yr15 derived from wild emmer wheat

(2014) Babak Abdollahi Mandoulakani et al.   THEORETICAL AND APPLIED GENETICS

Linkage disequilibrium and association analysis of stripe rust resistance in wild emmer wheat (Triticum turgidum ssp. dicoccoides) population in Israel

(2014) Hanan Sela et al.   THEORETICAL AND APPLIED GENETICS

Comparative genetic mapping and genomic region collinearity analysis of the powdery mildew resistance gene Pm41

(2014) Zhenzhong Wang et al.   THEORETICAL AND APPLIED GENETICS

QTug.sau-3B Is a Major Quantitative Trait Locus for Wheat Hexaploidization

(2014) Ming Hao et al.   G3-Genes Genomes Genetics

Next-Generation Survey Sequencing and the Molecular Organization of Wheat Chromosome 6B

(2013) T. Tanaka et al.   DNA RESEARCH

Draft genome of the wheat A-genome progenitor Triticum urartu

(2013) Hong-Qing Ling et al.   NATURE

Aegilops tauschii draft genome sequence reveals a gene repertoire for wheat adaptation

(2013) Jizeng Jia et al.   NATURE

Diploidization and genome size change in allopolyploids is associated with differential dynamics of low- and high-copy sequences

(2013) Simon Renny-Byfield et al.   PLANT JOURNAL

Proteome changes in wild and modern wheat leaves upon drought stress by two-dimensional electrophoresis and nanoLC-ESI–MS/MS

(2013) Hikmet Budak et al.   PLANT MOLECULAR BIOLOGY

FISHIS: Fluorescence In Situ Hybridization in Suspension and Chromosome Flow Sorting Made Easy

(2013) Debora Giorgi et al.   PLoS One

Unique and Conserved MicroRNAs in Wheat Chromosome 5D Revealed by Next-Generation Sequencing

(2013) Kuaybe Yucebilgili Kurtoglu et al.   PLoS One

A Superfamily of DNA Transposons Targeting Multicopy Small RNA Genes

(2013) Kenji K. Kojima et al.   PLoS One

Comparative High-Resolution Mapping of the Wax Inhibitors Iw1 and Iw2 in Hexaploid Wheat

(2013) Haibin Wu et al.   PLoS One

Drought Tolerance in Modern and Wild Wheat

(2013) Hikmet Budak et al.   TheScientificWorldJOURNAL

Combining SNP discovery from next-generation sequencing data with bulked segregant analysis (BSA) to fine-map genes in polyploid wheat

(2012) Martin Trick et al.   BMC PLANT BIOLOGY

Analysis of the bread wheat genome using whole-genome shotgun sequencing

(2012) Rachel Brenchley et al.   NATURE

MIPS PlantsDB: a database framework for comparative plant genome research

(2012) Thomas Nussbaumer et al.   NUCLEIC ACIDS RESEARCH

A MicroRNA Superfamily Regulates Nucleotide Binding Site-Leucine-Rich Repeats and Other mRNAs

(2012) P. V. Shivaprasad et al.   PLANT CELL

High-density mapping and marker development for the powdery mildew resistance gene PmAS846 derived from wild emmer wheat (Triticum turgidum var. dicoccoides)

(2012) Fei Xue et al.   THEORETICAL AND APPLIED GENETICS

Sequence-based marker development in wheat: Advances and applications to breeding

(2011) Etienne Paux et al.   BIOTECHNOLOGY ADVANCES

Annotation-based genome-wide SNP discovery in the large and complex Aegilops tauschii genome using next-generation sequencing without a reference genome sequence

(2011) Frank M You et al.   BMC GENOMICS

Frequent Gene Movement and Pseudogene Evolution Is Common to the Large and Complex Genomes of Wheat, Barley, and Their Relatives

(2011) Thomas Wicker et al.   PLANT CELL

First Survey of the Wheat Chromosome 5A Composition through a Next Generation Sequencing Approach

(2011) Nicola Vitulo et al.   PLoS One

Development of Chromosome-Specific BAC Resources for Genomics of Bread Wheat

(2010) J. Šafář et al.   CYTOGENETIC AND GENOME RESEARCH

Regulation of barley miRNAs upon dehydration stress correlated with target gene expression

(2010) Melda Kantar et al.   FUNCTIONAL & INTEGRATIVE GENOMICS

Patching gaps in plant genomes results in gene movement and erosion of colinearity

(2010) T. Wicker et al.   GENOME RESEARCH

Genome sequencing and analysis of the model grass Brachypodium distachyon

(2010) John P. Vogel et al.   NATURE

Genetic and comparative genomics mapping reveals that a powdery mildew resistance gene Ml3D232 originating from wild emmer co-segregates with an NBS-LRR analog in common wheat (Triticum aestivum L.)

(2010) Hongtao Zhang et al.   THEORETICAL AND APPLIED GENETICS

BLAST+: architecture and applications

(2009) Christiam Camacho et al.   BMC BIOINFORMATICS

Transcriptome pathways unique to dehydration tolerant relatives of modern wheat

(2009) Neslihan Z. Ergen et al.   FUNCTIONAL & INTEGRATIVE GENOMICS

Circos: An information aesthetic for comparative genomics

(2009) M. Krzywinski et al.   GENOME RESEARCH

The Sorghum bicolor genome and the diversification of grasses

(2009) Andrew H. Paterson et al.   NATURE

Drought and salt tolerances in wild relatives for wheat and barley improvement

(2009) EVIATAR NEVO et al.   PLANT CELL AND ENVIRONMENT

Coupling amplified DNA from flow-sorted chromosomes to high-density SNP mapping in barley

(2008) Hana Šimková et al.   BMC GENOMICS

Wild emmer: genetic resources, gene mapping and potential for wheat improvement

(2008) Weilong Xie et al.   EUPHYTICA

Sequencing over 13 000 expressed sequence tags from six subtractive cDNA libraries of wild and modern wheats following slow drought stress

(2008) NESLIHAN Z. ERGEN et al.   PLANT CELL AND ENVIRONMENT

Molecular mapping of the novel powdery mildew resistance gene Pm36 introgressed from Triticum turgidum var. dicoccoides in durum wheat

(2008) Antonio Blanco et al.   THEORETICAL AND APPLIED GENETICS

Cereal breeding takes a walk on the wild side

(2007) Catherine Feuillet et al.   TRENDS IN GENETICS