A review of how we assess denitrification in oyster habitats and proposed guidelines for future studies

Drivers of Oyster Reef Ecosystem Metabolism Measured Across Multiple Timescales

(2020) Martin P. Volaric et al.   Estuaries and Coasts

Rebuilding marine life

(2020) Carlos M. Duarte et al.   NATURE

Best Management Practices for Diffuse Nutrient Pollution: Wicked Problems Across Urban and Agricultural Watersheds

(2020) Anna Lintern et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

Sediment biogeochemistry along an oyster aquaculture chronosequence

(2020) NE Ray et al.   MARINE ECOLOGY PROGRESS SERIES

Seasonal patterns of benthic-pelagic coupling in oyster habitats

(2020) NE Ray et al.   MARINE ECOLOGY PROGRESS SERIES

The Globalization of Cultural Eutrophication in the Coastal Ocean: Causes and Consequences

(2020) Thomas C. Malone et al.   Frontiers in Marine Science

Meta-analysis of oyster impacts on coastal biogeochemistry

(2020) Nicholas E. Ray et al.   Nature Sustainability

Application of the isotope pairing technique in sediments: Use, challenges, and new directions

(2019) Elizabeth K. Robertson et al.   LIMNOLOGY AND OCEANOGRAPHY-METHODS

Nitrogen and phosphorus cycling in the digestive system and shell biofilm of the eastern oyster Crassostrea virginica

(2019) NE Ray et al.   MARINE ECOLOGY PROGRESS SERIES

Living shorelines enhance nitrogen removal capacity over time

(2018) Kathleen M. Onorevole et al.   ECOLOGICAL ENGINEERING

Oxygen metabolism of intertidal oyster reefs measured by aquatic eddy covariance

(2018) MP Volaric et al.   MARINE ECOLOGY PROGRESS SERIES

The microbial nitrogen-cycling network

(2018) Marcel M. M. Kuypers et al.   NATURE REVIEWS MICROBIOLOGY

Australian shellfish ecosystems: Past distribution, current status and future direction

(2018) Chris L. Gillies et al.   PLoS One

Oxygen metabolism of intertidal oyster reefs measured by aquatic eddy covariance

(2018) MP Volaric et al.   MARINE ECOLOGY PROGRESS SERIES

Restoring the eastern oyster: how much progress has been made in 53 years?

(2018) Ada Bersoza Hernández et al.   FRONTIERS IN ECOLOGY AND THE ENVIRONMENT

Successful recruitment, survival and long-term persistence of eastern oyster and hooked mussel on a subtidal, artificial restoration reef system in Chesapeake Bay

(2018) Romuald N. Lipcius et al.   PLoS One

Measuring carbon and nitrogen bioassimilation, burial, and denitrification contributions of oyster reefs in Gulf coast estuaries

(2018) Phillip Westbrook et al.   MARINE BIOLOGY

Comparison of methods for determining biogeochemical fluxes from a restored oyster reef

(2018) Melanie Jackson et al.   PLoS One

Microbial Nitrogen Cycling in Estuaries: From Genes to Ecosystem Processes

(2017) Julian Damashek et al.   Estuaries and Coasts

How Well Do Restored Intertidal Oyster Reefs Support Key Biogeochemical Properties in a Coastal Lagoon?

(2017) Lisa G. Chambers et al.   Estuaries and Coasts

Oyster (Crassostrea virginica) Aquaculture Shifts Sediment Nitrogen Processes toward Mineralization over Denitrification

(2017) Abby Lunstrum et al.   Estuaries and Coasts

Differential Effects of Bivalves on Sediment Nitrogen Cycling in a Shallow Coastal Bay

(2017) Ashley R. Smyth et al.   Estuaries and Coasts

The impact of suspended oyster farming on nitrogen cycling and nitrous oxide production in a sub-tropical Australian estuary

(2017) Dirk V. Erler et al.   ESTUARINE COASTAL AND SHELF SCIENCE

Denitrification potential of the eastern oyster microbiome using a 16S rRNA gene based metabolic inference approach

(2017) Ann Arfken et al.   PLoS One

Sediment Suspension and Deposition Across Restored Oyster Reefs of Varying Orientation to Flow: Implications for Restoration

(2016) Allison M. Colden et al.   Estuaries and Coasts

Oxygen interference with membrane inlet mass spectrometry may overestimate denitrification rates calculated with the isotope pairing technique

(2016) Abby Lunstrum et al.   LIMNOLOGY AND OCEANOGRAPHY-METHODS

Biological activity exceeds biogenic structure in influencing sediment nitrogen cycling in experimental oyster reefs

(2016) AR Smyth et al.   MARINE ECOLOGY PROGRESS SERIES

Living oysters and their shells as sites of nitrification and denitrification

(2016) Jane M. Caffrey et al.   MARINE POLLUTION BULLETIN

Biological activity exceeds biogenic structure in influencing sediment nitrogen cycling in experimental oyster reefs

(2016) AR Smyth et al.   MARINE ECOLOGY PROGRESS SERIES

Toward the Geoscience Paper of the Future: Best practices for documenting and sharing research from data to software to provenance

(2016) Yolanda Gil et al.   Earth and Space Science

Evaluating the impact of oyster (Crassostrea virginica) gardening on sediment nitrogen cycling in a subtropical estuary

(2015) Behzad Mortazavi et al.   BULLETIN OF MARINE SCIENCE

A review of existing eastern oyster filtration rate models

(2015) Melinda K. Ehrich et al.   ECOLOGICAL MODELLING

A Multi-module Approach to Calculation of Oyster (Crassostrea virginica) Environmental Benefits

(2015) Carl F. Cerco   ENVIRONMENTAL MANAGEMENT

Effect of Eastern Oysters (Crassostrea virginica) and Seasonality on Nitrite Reductase Gene Abundance (nirS, nirK, nrfA) in an Urban Estuary

(2015) Samantha Lindemann et al.   Estuaries and Coasts

Influence of organic carbon and nitrate loading on partitioning between dissimilatory nitrate reduction to ammonium (DNRA) and N 2 production

(2015) Amber K. Hardison et al.   GEOCHIMICA ET COSMOCHIMICA ACTA

Habitat context influences nitrogen removal by restored oyster reefs

(2015) Ashley R. Smyth et al.   JOURNAL OF APPLIED ECOLOGY

Modeling the impact of floating oyster (Crassostrea virginica) aquaculture on sediment-water nutrient and oxygen fluxes

(2015) JM Testa et al.   Aquaculture Environment Interactions

Examining the impact of acetylene on N-fixation and the active sediment microbial community

(2015) Robinson W. Fulweiler et al.   Frontiers in Microbiology

Eastern oyster (Crassostrea virginica) filtration, biodeposition, and sediment nitrogen cycling at two oyster reefs with contrasting water quality in Great Bay Estuary (New Hampshire, USA)

(2014) Timothy J. Hoellein et al.   BIOGEOCHEMISTRY

A Role for Shellfish Aquaculture in Coastal Nitrogen Management

(2014) Julie M. Rose et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

(Nearly) A Decade of Directly Measured Sediment N2 Fluxes: What Can Narragansett Bay Tell Us About the Global Ocean Nitrogen Budget?

(2014) Robinson Fulweiller et al.   OCEANOGRAPHY

Accounting for Multiple Foundation Species in Oyster Reef Restoration Benefits

(2014) Keryn B. Gedan et al.   RESTORATION ECOLOGY

Connecting the dots: linking nitrogen cycle gene expression to nitrogen fluxes in marine sediment mesocosms

(2014) Jennifer L. Bowen et al.   Frontiers in Microbiology

Effect of eastern oysters (Crassostrea virginica) on sediment carbon and nitrogen dynamics in an urban estuary

(2013) Timothy J. Hoellein et al.   ECOLOGICAL APPLICATIONS

Coupling 3-D Eulerian bio-physics (ROMS) with individual-based shellfish ecophysiology (SHELL-E): A hybrid model for carrying capacity and environmental impacts of bivalve aquaculture

(2013) Diego A. Ibarra et al.   ECOLOGICAL MODELLING

Mats of the nonnative macroalga,Gracilaria vermiculophylla, alter net denitrification rates and nutrient fluxes on intertidal mudflats

(2013) Dana J. Gonzalez et al.   LIMNOLOGY AND OCEANOGRAPHY

Oyster-mediated benthic-pelagic coupling modifies nitrogen pools and processes

(2013) AR Smyth et al.   MARINE ECOLOGY PROGRESS SERIES

Denitrification and nutrient assimilation on a restored oyster reef

(2013) ML Kellogg et al.   MARINE ECOLOGY PROGRESS SERIES

Influence of buried Ulva lactuca on denitrification in permeable sediments

(2013) MF Bourke et al.   MARINE ECOLOGY PROGRESS SERIES

Economic Valuation of Ecosystem Services Provided by Oyster Reefs

(2012) Jonathan H. Grabowski et al.   BIOSCIENCE

Bivalve-enhanced nitrogen removal from coastal estuaries

(2012) Ruth H. Carmichael et al.   CANADIAN JOURNAL OF FISHERIES AND AQUATIC SCIENCES

Soil properties are useful to examine denitrification function development in created mitigation wetlands

(2012) Changwoo Ahn et al.   ECOLOGICAL ENGINEERING

Assessing Nitrogen Dynamics Throughout the Estuarine Landscape

(2012) Ashley R. Smyth et al.   Estuaries and Coasts

Effect of aquacultured oyster biodeposition on sediment N2 production in Chesapeake Bay

(2012) CB Higgins et al.   MARINE ECOLOGY PROGRESS SERIES

Analysis of Stomach and Gut Microbiomes of the Eastern Oyster (Crassostrea virginica) from Coastal Louisiana, USA

(2012) Gary M. King et al.   PLoS One

Historical ecology with real numbers: past and present extent and biomass of an imperilled estuarine habitat

(2012) P. S. E. Zu Ermgassen et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Oyster Reefs at Risk and Recommendations for Conservation, Restoration, and Management

(2011) Michael W. Beck et al.   BIOSCIENCE

Habitat-specific distinctions in estuarine denitrification affect both ecosystem function and services

(2011) M. F. Piehler et al.   Ecosphere

A simulation model of carrying capacity for mussel culture in a Norwegian fjord: Role of induced upwelling

(2010) Ramón Filgueira et al.   AQUACULTURE

An initial assessment of native and invasive tunicates in shellfish aquaculture of the North American east coast

(2010) M. R. Carman et al.   JOURNAL OF APPLIED ICHTHYOLOGY

Bivalve aquaculture in estuaries: Review and synthesis of oyster cultivation effects

(2009) Barrie M. Forrest et al.   AQUACULTURE

Challenges to incorporating spatially and temporally explicit phenomena (hotspots and hot moments) in denitrification models

(2009) Peter M. Groffman et al.   BIOGEOCHEMISTRY

A Box Model for Ecosystem-Level Management of Mussel Culture Carrying Capacity in a Coastal Bay

(2009) Ramón Filgueira et al.   ECOSYSTEMS

Co-occurrence of denitrification and nitrogen fixation in a meromictic lake, Lake Cadagno (Switzerland)

(2009) Hannah Halm et al.   ENVIRONMENTAL MICROBIOLOGY

Integrated assessment of ecosystem-scale carrying capacity in shellfish growing areas

(2008) J.G. Ferreira et al.   AQUACULTURE

Modeling denitrification in aquatic sediments

(2008) Katja Fennel et al.   BIOGEOCHEMISTRY