Molecular dynamics simulation of Toxin‐Antitoxin (TA) system in Acinetobacter baumannii to explore the novel mechanism for inhibition of cell wall biosynthesis: Zeta Toxin as an effective therapeutic target

Fast multipole method for three‐dimensional systems with periodic boundary condition in two directions

(2020) Noriyuki Yoshii et al.   JOURNAL OF COMPUTATIONAL CHEMISTRY

Acinetobacter portensis sp. nov. and Acinetobacter guerrae sp. nov., isolated from raw meat

(2020) Ana Carvalheira et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

Molecular docking, dynamics and free energy analyses of Acinetobacter baumannii OXA class enzymes with carbapenems investigating their hydrolytic mechanisms

(2020) Balajee Ramachandran et al.   JOURNAL OF MEDICAL MICROBIOLOGY

A Primary Physiological Role of Toxin/Antitoxin Systems Is Phage Inhibition

(2020) Sooyeon Song et al.   Frontiers in Microbiology

Antibiotic Resistance Profiles, Molecular Mechanisms and Innovative Treatment Strategies of Acinetobacter baumannii

(2020) Corneliu Ovidiu Vrancianu et al.   Microorganisms

Computer aided ligand based screening for identification of promising molecules against enzymes involved in peptidoglycan biosynthetic pathway from Acinetobacter baumannii

(2020) Gizachew Muluneh Amera et al.   MICROBIAL PATHOGENESIS

Atomistic simulation on flavonoids derivatives as potential inhibitors of bacterial gyrase of Staphylococcus aureus

(2020) Balajee Ramachandran et al.   JOURNAL OF BIOMOLECULAR STRUCTURE & DYNAMICS

Toxin ζ Reduces the ATP and Modulates the Uridine Diphosphate-N-acetylglucosamine Pool

(2019) María Moreno-del Álamo et al.   Toxins

Identification and functional characterization of a bacterial homologue of Zeta toxin in Leishmania donovani

(2019) Akriti Srivastava et al.   FEBS LETTERS

TASmania: A bacterial Toxin-Antitoxin Systems database

(2019) Hatice Akarsu et al.   PLoS Computational Biology

New insights into the role of plasmids from probiotic Lactobacillus pentosus MP-10 in Aloreña table olive brine fermentation

(2019) Hikmate Abriouel et al.   Scientific Reports

Identification of peptidomimetic compounds as potential inhibitors against MurA enzyme of Mycobacterium tuberculosis

(2019) Prateek Kumar et al.   JOURNAL OF BIOMOLECULAR STRUCTURE & DYNAMICS

Identification of anti-filarial leads against aspartate semialdehyde dehydrogenase of Wolbachia endosymbiont of Brugia malayi: combined molecular docking and molecular dynamics approaches

(2018) Mathimaran Amala et al.   JOURNAL OF BIOMOLECULAR STRUCTURE & DYNAMICS

UniProt: the universal protein knowledgebase

(2018) The UniProt Consortium   NUCLEIC ACIDS RESEARCH

The ng_ζ1 toxin of the gonococcal epsilon/zeta toxin/antitoxin system drains precursors for cell wall synthesis

(2018) Andrea Rocker et al.   Nature Communications

Biology of Acinetobacter baumannii: Pathogenesis, Antibiotic Resistance Mechanisms, and Prospective Treatment Options

(2017) Chang-Ro Lee et al.   Frontiers in Cellular and Infection Microbiology

Pharmacophore modeling and structure-based virtual screening to identify potent inhibitors targeting LuxP ofVibrio harveyi

(2016) Sundaraj Rajamanikandan et al.   JOURNAL OF RECEPTORS AND SIGNAL TRANSDUCTION

RaptorX-Property: a web server for protein structure property prediction

(2016) Sheng Wang et al.   NUCLEIC ACIDS RESEARCH

Toxin-Antitoxin Systems in Clinical Pathogens

(2016) Laura Fernández-García et al.   Toxins

Toxin-Antitoxin Systems of Staphylococcus aureus

(2016) Christopher Schuster et al.   Toxins

Comparative Genomics of Two ST 195 Carbapenem-Resistant Acinetobacter baumannii with Different Susceptibility to Polymyxin Revealed Underlying Resistance Mechanism

(2016) Soo-Sum Lean et al.   Frontiers in Microbiology

A novel method of consensus pan-chromosome assembly and large-scale comparative analysis reveal the highly flexible pan-genome of Acinetobacter baumannii

(2015) Agnes P. Chan et al.   GENOME BIOLOGY

The ClpXP Protease Is Responsible for the Degradation of the Epsilon Antidote to the Zeta Toxin of the Streptococcal pSM19035 Plasmid

(2014) Iwona Brzozowska et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Docking Covalent Inhibitors: A Parameter Free Approach To Pose Prediction and Scoring

(2014) Kai Zhu et al.   Journal of Chemical Information and Modeling

Toxin-Antitoxin Systems as Multilevel Interaction Systems

(2014) Nathalie Goeders et al.   Toxins

GROMACS 4.5: a high-throughput and highly parallel open source molecular simulation toolkit

(2013) Sander Pronk et al.   BIOINFORMATICS

Identification and Characterization of Type II Toxin-Antitoxin Systems in the Opportunistic Pathogen Acinetobacter baumannii

(2013) M. Jurenaite et al.   JOURNAL OF BACTERIOLOGY

Pfam: the protein families database

(2013) Robert D. Finn et al.   NUCLEIC ACIDS RESEARCH

Acinetobacter baumannii: evolution of a global pathogen

(2013) Luísa C.S. Antunes et al.   Pathogens and Disease

Toxin-Antitoxin Genes of the Gram-Positive Pathogen Streptococcus pneumoniae: So Few and Yet So Many

(2012) Wai Ting Chan et al.   MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS

Fast, scalable generation of high-quality protein multiple sequence alignments using Clustal Omega

(2011) F. Sievers et al.   Molecular Systems Biology

DEPTH: a web server to compute depth and predict small-molecule binding cavities in proteins

(2011) Kuan Pern Tan et al.   NUCLEIC ACIDS RESEARCH

A Novel Mechanism of Programmed Cell Death in Bacteria by Toxin–Antitoxin Systems Corrupts Peptidoglycan Synthesis

(2011) Hannes Mutschler et al.   PLOS BIOLOGY

3DLigandSite: predicting ligand-binding sites using similar structures

(2010) Mark N. Wass et al.   NUCLEIC ACIDS RESEARCH

In Vivo Interactions between Toxin-Antitoxin Proteins Epsilon and Zeta of Streptococcal Plasmid pSM19035 in Saccharomyces cerevisiae

(2009) U. Zielenkiewicz et al.   JOURNAL OF BACTERIOLOGY

AutoDock Vina: Improving the speed and accuracy of docking with a new scoring function, efficient optimization, and multithreading

(2009) Oleg Trott et al.   JOURNAL OF COMPUTATIONAL CHEMISTRY

Acinetobacter baumannii invades epithelial cells and outer membrane protein A mediates interactions with epithelial cells

(2008) Chul Hee Choi et al.   BMC MICROBIOLOGY

P-LINCS:  A Parallel Linear Constraint Solver for Molecular Simulation

(2007) Berk Hess   Journal of Chemical Theory and Computation