RNA-Seq-Based Profiling of pl Mutant Reveals Transcriptional Regulation of Anthocyanin Biosynthesis in Rice (Oryza sativa L.)

PyWRKY26 and PybHLH3 cotargeted the PyMYB114 promoter to regulate anthocyanin biosynthesis and transport in red-skinned pears

(2020) Chuang Li et al.   Horticulture Research

The novel gene BrMYB2, located on chromosome A07, with a short intron 1 controls the purple-head trait of Chinese cabbage (Brassica rapa L.)

(2020) Qiong He et al.   Horticulture Research

A rice gene, OsPL, encoding a MYB family transcription factor confers anthocyanin synthesis, heat stress response and hormonal signaling

(2019) Delara Akhter et al.   GENE

Transcriptional Profile Corroborates that bml Mutant Plays likely Role in Premature Leaf Senescence of Rice (Oryza sativa L.)

(2019) Delara Akhter et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

BBX16, a B‐box protein, positively regulates light‐induced anthocyanin accumulation by activating MYB10 in red pear

(2019) Songling Bai et al.   PLANT BIOTECHNOLOGY JOURNAL

Md WRKY 40 promotes wounding‐induced anthocyanin biosynthesis in association with Md MYB 1 and undergoes Md BT 2‐mediated degradation

(2019) Jian‐Ping An et al.   NEW PHYTOLOGIST

An apple MYB transcription factor regulates cold tolerance and anthocyanin accumulation and undergoes MIEL1‐mediated degradation

(2019) Jian‐Ping An et al.   PLANT BIOTECHNOLOGY JOURNAL

Integrated physiological and genomic analysis reveals structural variations and expression patterns of candidate genes for colored- and green-leaf poplar

(2019) Weibing Zhuang et al.   Scientific Reports

Transcriptional regulation of anthocyanin biosynthesis in a high-anthocyanin resynthesized Brassica napus cultivar

(2018) Gayatri Goswami et al.   Journal of Biological Research-Thessaloniki

Complementary RNA-Sequencing Based Transcriptomics and iTRAQ Proteomics Reveal the Mechanism of the Alleviation of Quinclorac Stress by Salicylic Acid in Oryza sativa ssp. japonica

(2017) Jian Wang et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

The ferredoxin-dependent glutamate synthase (OsFd-GOGAT) participates in leaf senescence and the nitrogen remobilization in rice

(2016) Dong-Dong Zeng et al.   MOLECULAR GENETICS AND GENOMICS

Anthocyanin Accumulation and Molecular Analysis of Correlated Genes in Purple Kohlrabi (Brassica oleracea var. gongylodes L.)

(2015) Yanjie Zhang et al.   JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY

HISAT: a fast spliced aligner with low memory requirements

(2015) Daehwan Kim et al.   NATURE METHODS

Transcriptome and gene expression analysis of DHA producer Aurantiochytrium under low temperature conditions

(2015) Zengxin Ma et al.   Scientific Reports

Plant Flavonoids—Biosynthesis, Transport and Involvement in Stress Responses

(2013) Elisa Petrussa et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Phenylpropanoid metabolites and expression of key genes involved in anthocyanin biosynthesis in the shaded peel of apple fruit in response to sun exposure

(2013) Fengjuan Feng et al.   PLANT PHYSIOLOGY AND BIOCHEMISTRY

Fine mapping of Pa-6 gene for purple apiculus in rice

(2012) Xu Liu et al.   JOURNAL OF PLANT BIOLOGY

clusterProfiler: an R Package for Comparing Biological Themes Among Gene Clusters

(2012) Guangchuang Yu et al.   OMICS-A JOURNAL OF INTEGRATIVE BIOLOGY

RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome

(2011) Bo Li et al.   BMC BIOINFORMATICS

Using RNA-Seq for gene identification, polymorphism detection and transcript profiling in two alfalfa genotypes with divergent cell wall composition in stems

(2011) S Samuel Yang et al.   BMC GENOMICS

Recent advances in the transcriptional regulation of the flavonoid biosynthetic pathway

(2011) Imène Hichri et al.   JOURNAL OF EXPERIMENTAL BOTANY

Recent advances on the regulation of anthocyanin synthesis in reproductive organs

(2011) Katia Petroni et al.   PLANT SCIENCE

Advancing RNA-Seq analysis

(2010) Brian J Haas et al.   NATURE BIOTECHNOLOGY

Roles for glutathione transferases in plant secondary metabolism

(2010) David P. Dixon et al.   PHYTOCHEMISTRY

The Purple Cauliflower Arises from Activation of a MYB Transcription Factor

(2010) L.-W. Chiu et al.   PLANT PHYSIOLOGY

Functional Analysis of the Arabidopsis PAL Gene Family in Plant Growth, Development, and Response to Environmental Stress

(2010) J. Huang et al.   PLANT PHYSIOLOGY

Anthocyanin biosynthesis in pears is regulated by a R2R3-MYB transcription factor PyMYB10

(2010) Shouqian Feng et al.   PLANTA

MYB transcription factors in Arabidopsis

(2010) Christian Dubos et al.   TRENDS IN PLANT SCIENCE

The Sanger FASTQ file format for sequences with quality scores, and the Solexa/Illumina FASTQ variants

(2009) Peter J. A. Cock et al.   NUCLEIC ACIDS RESEARCH

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

(2009) Ben Langmead et al.   GENOME BIOLOGY

Differential expression of four Arabidopsis PAL genes; PAL1 and PAL2 have functional specialization in abiotic environmental-triggered flavonoid synthesis

(2008) Kristine M. Olsen et al.   JOURNAL OF PLANT PHYSIOLOGY

Mapping and quantifying mammalian transcriptomes by RNA-Seq

(2008) Ali Mortazavi et al.   NATURE METHODS

RNA-Seq: a revolutionary tool for transcriptomics

(2008) Zhong Wang et al.   NATURE REVIEWS GENETICS

Regulation of the anthocyanin biosynthetic pathway by the TTG1/bHLH/Myb transcriptional complex in Arabidopsis seedlings

(2008) Antonio Gonzalez et al.   PLANT JOURNAL

Biosynthesis of plant pigments: anthocyanins, betalains and carotenoids

(2008) Yoshikazu Tanaka et al.   PLANT JOURNAL