Complementary RNA-Sequencing Based Transcriptomics and iTRAQ Proteomics Reveal the Mechanism of the Alleviation of Quinclorac Stress by Salicylic Acid in Oryza sativa ssp. japonica

iTRAQ-based proteomics of sunflower cultivars differing in resistance to parasitic weed Orobanche cumana

(2017) Chong Yang et al.   PROTEOMICS

2,4-D attenuates salinity-induced toxicity by mediating anatomical changes, antioxidant capacity and cation transporters in the roots of rice cultivars

(2017) Faisal Islam et al.   Scientific Reports

Seed treatment with salicylic acid invokes defence mechanism ofHelianthus annuusagainstOrobanche cumana

(2016) C. Yang et al.   ANNALS OF APPLIED BIOLOGY

Comparative transcriptome profiling of two Brassica napus cultivars under chromium toxicity and its alleviation by reduced glutathione

(2016) Rafaqat A. Gill et al.   BMC GENOMICS

Rice NAC transcription factor ONAC095 plays opposite roles in drought and cold stress tolerance

(2016) Lei Huang et al.   BMC PLANT BIOLOGY

Salicylic acid mediates antioxidant defense system and ABA pathway related gene expression in Oryza sativa against quinclorac toxicity

(2016) Jian Wang et al.   ECOTOXICOLOGY AND ENVIRONMENTAL SAFETY

Role of exogenous salicylic acid in regulating physio-morphic and molecular changes under chromium toxicity in black- and yellow- seeded Brassica napus L.

(2016) Rafaqat A. Gill et al.   ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH

Association–Dissociation of Glycolate Oxidase with Catalase in Rice: A Potential Switch to Modulate Intracellular H 2 O 2 Levels

(2016) Zhisheng Zhang et al.   Molecular Plant

Serine carboxypeptidase 46 Regulates Grain Filling and Seed Germination in Rice (Oryza sativa L.)

(2016) Zhiyong Li et al.   PLoS One

Cloning and functional analysis of pale-green leaf (PGL10) in rice (Oryza sativa L.)

(2015) Yao-Long Yang et al.   PLANT GROWTH REGULATION

Gene knockout of glutathione reductase 3 results in increased sensitivity to salt stress in rice

(2015) Tsung-Meng Wu et al.   PLANT MOLECULAR BIOLOGY

Overexpression of an AP2/ERF Type Transcription Factor OsEREBP1 Confers Biotic and Abiotic Stress Tolerance in Rice

(2015) V. Jisha et al.   PLoS One

WRKY76 is a rice transcriptional repressor playing opposite roles in blast disease resistance and cold stress tolerance

(2013) Naoki Yokotani et al.   JOURNAL OF EXPERIMENTAL BOTANY

The ricefaded green leaflocus encodes protochlorophyllide oxidoreductase B and is essential for chlorophyll synthesis under high light conditions

(2013) Yasuhito Sakuraba et al.   PLANT JOURNAL

OsWRKY28, a PAMP-responsive transrepressor, negatively regulates innate immune responses in rice against rice blast fungus

(2013) Tetsuya Chujo et al.   PLANT MOLECULAR BIOLOGY

OsDREB2A, a Rice Transcription Factor, Significantly Affects Salt Tolerance in Transgenic Soybean

(2013) Xiu-xiang Zhang et al.   PLoS One

The rice ERF transcription factor OsERF922 negatively regulates resistance to Magnaporthe oryzae and salt tolerance

(2012) Dongfeng Liu et al.   JOURNAL OF EXPERIMENTAL BOTANY

A salicylic acid-induced rice (Oryza sativaL.) transcription factor OsWRKY77 is involved in disease resistance ofArabidopsis thaliana

(2012) A. Lan et al.   PLANT BIOLOGY

Functions of rice NAC transcriptional factors, ONAC122 and ONAC131, in defense responses against Magnaporthe grisea

(2012) Lijun Sun et al.   PLANT MOLECULAR BIOLOGY

RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome

(2011) Bo Li et al.   BMC BIOINFORMATICS

Using RNA-Seq for gene identification, polymorphism detection and transcript profiling in two alfalfa genotypes with divergent cell wall composition in stems

(2011) S Samuel Yang et al.   BMC GENOMICS

Differential expression in RNA-seq: A matter of depth

(2011) S. Tarazona et al.   GENOME RESEARCH

OsWRKY45 alleles play different roles in abscisic acid signalling and salt stress tolerance but similar roles in drought and cold tolerance in rice

(2011) Zeng Tao et al.   JOURNAL OF EXPERIMENTAL BOTANY

High-density kinetic analysis of the metabolomic and transcriptomic response of Arabidopsis to eight environmental conditions

(2011) Camila Caldana et al.   PLANT JOURNAL

OsIRO2 is responsible for iron utilization in rice and improves growth and yield in calcareous soil

(2011) Yuko Ogo et al.   PLANT MOLECULAR BIOLOGY

Functional Characterization of Evolutionarily Divergent 4-Coumarate:Coenzyme A Ligases in Rice

(2011) J. Gui et al.   PLANT PHYSIOLOGY

Induced over-expression of the transcription factor OsDREB2A improves drought tolerance in rice

(2011) Meng Cui et al.   PLANT PHYSIOLOGY AND BIOCHEMISTRY

Applications of next generation sequencing in molecular ecology of non-model organisms

(2010) R Ekblom et al.   HEREDITY

Advancing RNA-Seq analysis

(2010) Brian J Haas et al.   NATURE BIOTECHNOLOGY

Mitochondrial activity in illuminated leaves of chlorophyll-deficient mutant rice (OsCHLH) seedlings

(2010) Chang-Hyo Goh et al.   Plant Biotechnology Reports

Root-Specific Expression of OsNAC10 Improves Drought Tolerance and Grain Yield in Rice under Field Drought Conditions

(2010) J. S. Jeong et al.   PLANT PHYSIOLOGY

Photorespiratory Metabolism: Genes, Mutants, Energetics, and Redox Signaling

(2009) Christine H. Foyer et al.   Annual Review of Plant Biology

Fast and accurate short read alignment with Burrows-Wheeler transform

(2009) H. Li et al.   BIOINFORMATICS

Molecular characterization of a defense-related AMP-binding protein gene, OsBIABP1, from rice

(2009) Xin-chun Zhang et al.   Journal of Zhejiang University-SCIENCE B

NaCl-induced expression of glutathione reductase in roots of rice (Oryza sativa L.) seedlings is mediated through hydrogen peroxide but not abscisic acid

(2009) Chwan-Yang Hong et al.   PLANT AND SOIL

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

(2009) Ben Langmead et al.   GENOME BIOLOGY

Evolutionary and expression study of the aldehyde dehydrogenase (ALDH) gene superfamily in rice (Oryza sativa)

(2008) Chenxi Gao et al.   GENE

Mapping and quantifying mammalian transcriptomes by RNA-Seq

(2008) Ali Mortazavi et al.   NATURE METHODS

Rice Aldehyde Dehydrogenase7 Is Needed for Seed Maturation and Viability

(2008) J.-H. Shin et al.   PLANT PHYSIOLOGY

Comparative proteomic study of arsenic-induced differentially expressed proteins in rice roots reveals glutathione plays a central role during As stress

(2008) Nagib Ahsan et al.   PROTEOMICS