Predicting abundance indices in areas without coverage with a latent spatio-temporal Gaussian model

Seasonal and interannual variation in spatio-temporal models for index standardization and phenology studies

(2020) James T Thorson et al.   ICES JOURNAL OF MARINE SCIENCE

Spatio-temporal analysis of compositional data: increased precision and improved workflow using model-based inputs to stock assessment

(2018) James T Thorson et al.   CANADIAN JOURNAL OF FISHERIES AND AQUATIC SCIENCES

Arctic warming hotspot in the northern Barents Sea linked to declining sea-ice import

(2018) Sigrid Lind et al.   Nature Climate Change

Seasonal dynamics of spatial distributions and overlap between Northeast Arctic cod (Gadus morhua) and capelin (Mallotus villosus) in the Barents Sea

(2018) Johanna Fall et al.   PLoS One

Guidance for decisions using the Vector Autoregressive Spatio-Temporal (VAST) package in stock, ecosystem, habitat and climate assessments

(2018) James T. Thorson   FISHERIES RESEARCH

Validation of ecological state space models using the Laplace approximation

(2017) Uffe Høgsbro Thygesen et al.   ENVIRONMENTAL AND ECOLOGICAL STATISTICS

Comparing estimates of abundance trends and distribution shifts using single- and multispecies models of fishes and biogenic habitat

(2017) James T. Thorson et al.   ICES JOURNAL OF MARINE SCIENCE

Climate-driven changes in functional biogeography of Arctic marine fish communities

(2017) André Frainer et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Spatial and temporal changes in the Barents Sea pelagic compartment during the recent warming

(2017) Elena Eriksen et al.   PROGRESS IN OCEANOGRAPHY

Latent Gaussian models to decide on spatial closures for bycatch management in the Barents Sea shrimp fishery

(2016) Olav Nikolai Breivik et al.   CANADIAN JOURNAL OF FISHERIES AND AQUATIC SCIENCES

A state-space approach to incorporating environmental effects on recruitment in an age-structured assessment model with an application to southern New England yellowtail flounder

(2016) Timothy J. Miller et al.   CANADIAN JOURNAL OF FISHERIES AND AQUATIC SCIENCES

Implementing a generic method for bias correction in statistical models using random effects, with spatial and population dynamics examples

(2016) James T. Thorson et al.   FISHERIES RESEARCH

Accounting for correlated observations in an age-based state-space stock assessment model

(2016) Casper W. Berg et al.   ICES JOURNAL OF MARINE SCIENCE

TMB: Automatic Differentiation and Laplace Approximation

(2016) Kasper Kristensen et al.   Journal of Statistical Software

Model-based inference for estimating shifts in species distribution, area occupied and centre of gravity

(2016) James T. Thorson et al.   Methods in Ecology and Evolution

Recent warming leads to a rapid borealization of fish communities in the Arctic

(2015) Maria Fossheim et al.   Nature Climate Change

Estimation of time-varying selectivity in stock assessments using state-space models

(2014) Anders Nielsen et al.   FISHERIES RESEARCH

Evaluation of alternative age-based methods for estimating relative abundance from survey data in relation to assessment models

(2013) Casper W. Berg et al.   FISHERIES RESEARCH

Meta-analysis reveals lower genetic diversity in overfished populations

(2013) Malin L. Pinsky et al.   MOLECULAR ECOLOGY

An explicit link between Gaussian fields and Gaussian Markov random fields: the stochastic partial differential equation approach

(2011) Finn Lindgren et al.   JOURNAL OF THE ROYAL STATISTICAL SOCIETY SERIES B-STATISTICAL METHODOLOGY

Approximate Bayesian inference for latent Gaussian models by using integrated nested Laplace approximations

(2009) Håvard Rue et al.   JOURNAL OF THE ROYAL STATISTICAL SOCIETY SERIES B-STATISTICAL METHODOLOGY

In hot water: zooplankton and climate change

(2008) A. J. Richardson   ICES JOURNAL OF MARINE SCIENCE