A state-space approach to incorporating environmental effects on recruitment in an age-structured assessment model with an application to southern New England yellowtail flounder

A state-space stock assessment model for northern cod, including under-reported catches and variable natural mortality rates

(2016) Noel G. Cadigan   CANADIAN JOURNAL OF FISHERIES AND AQUATIC SCIENCES

Ecosystem processes are rarely included in tactical fisheries management

(2015) Mette Skern-Mauritzen et al.   FISH AND FISHERIES

Estimation of time-varying selectivity in stock assessments using state-space models

(2014) Anders Nielsen et al.   FISHERIES RESEARCH

Random effect estimation of time-varying factors in Stock Synthesis

(2014) J. T. Thorson et al.   ICES JOURNAL OF MARINE SCIENCE

Evaluating the Consequences of Adjusting Fish Stock Assessment Estimates of Biomass for Retrospective Patterns using Mohn's Rho

(2014) Jonathan J. Deroba   NORTH AMERICAN JOURNAL OF FISHERIES MANAGEMENT

An age-structured state-space stock–recruit model for Pacific salmon (Oncorhynchus spp.)

(2013) Steven J. Fleischman et al.   CANADIAN JOURNAL OF FISHERIES AND AQUATIC SCIENCES

Comment on temperature-dependent stock–recruit modeling for Pacific sardine (Sardinops sagax) in Jacobson and MacCall (1995), McClatchie et al. (2010), and Lindegren and Checkley (2013)

(2013) Larry D. Jacobson et al.   CANADIAN JOURNAL OF FISHERIES AND AQUATIC SCIENCES

Fisheries management under climate and environmental uncertainty: control rules and performance simulation

(2013) A. E. Punt et al.   ICES JOURNAL OF MARINE SCIENCE

Impact of survey design changes on stock assessment advice: sea scallops

(2013) Stephen J. Smith et al.   ICES JOURNAL OF MARINE SCIENCE

Stock synthesis: A biological and statistical framework for fish stock assessment and fishery management

(2012) Richard D. Methot et al.   FISHERIES RESEARCH

Adjusting for bias due to variability of estimated recruitments in fishery assessment models

(2011) Richard D. Methot et al.   CANADIAN JOURNAL OF FISHERIES AND AQUATIC SCIENCES

Modelling non-stationary natural mortality in catch-at-age models

(2011) Y. Jiao et al.   ICES JOURNAL OF MARINE SCIENCE

AD Model Builder: using automatic differentiation for statistical inference of highly parameterized complex nonlinear models

(2011) David A. Fournier et al.   OPTIMIZATION METHODS & SOFTWARE

When can we reliably estimate the productivity of fish stocks?

(2010) Paul B. Conn et al.   CANADIAN JOURNAL OF FISHERIES AND AQUATIC SCIENCES

Re-assessment of the stock–recruit and temperature–recruit relationships for Pacific sardine (Sardinops sagax)

(2010) Sam McClatchie et al.   CANADIAN JOURNAL OF FISHERIES AND AQUATIC SCIENCES

Dealing with missing covariate data in fishery stock assessment models

(2009) Mark N. Maunder et al.   FISHERIES RESEARCH

Testing different methods of incorporating climate data into the assessment of US West Coast sablefish

(2009) M. J. Schirripa et al.   ICES JOURNAL OF MARINE SCIENCE

INCORPORATING COVARIATES INTO FISHERIES STOCK ASSESSMENT MODELS WITH APPLICATION TO PACIFIC HERRING

(2008) Richard B. Deriso et al.   ECOLOGICAL APPLICATIONS

Evaluating methods for estimating process and observation error variances in statistical catch-at-age analysis

(2008) Brian C. Linton et al.   FISHERIES RESEARCH