Epigenetic mapping of the somatotropic axis in Nile tilapia reveals differential DNA hydroxymethylation marks associated with growth

Major gene expression changes and epigenetic remodelling in Nile tilapia muscle after just one generation of domestication

(2020) Ioannis Konstantinidis et al.   Epigenetics

Introns as Gene Regulators: A Brick on the Accelerator

(2019) Alan B. Rose   Frontiers in Genetics

Differences in the fast muscle methylome provide insight into sex-specific epigenetic regulation of growth in Nile tilapia during early stages of domestication

(2019) Tomasz Podgorniak et al.   Epigenetics

g:Profiler: a web server for functional enrichment analysis and conversions of gene lists (2019 update)

(2019) Uku Raudvere et al.   NUCLEIC ACIDS RESEARCH

Epimutations in developmental genes underlie the onset of domestication in farmed European sea bass

(2019) Dafni Anastasiadi et al.   MOLECULAR BIOLOGY AND EVOLUTION

Genome-wide DNA methylation and hydroxymethylation analysis reveal human menstrual blood-derived stem cells inhibit hepatocellular carcinoma growth through oncogenic pathway suppression via regulating 5-hmC in enhancer elements

(2019) Yichen Wu et al.   Stem Cell Research & Therapy

Graph-based genome alignment and genotyping with HISAT2 and HISAT-genotype

(2019) Daehwan Kim et al.   NATURE BIOTECHNOLOGY

Glutamate at the Vertebrate Neuromuscular Junction: From Modulation to Neurotransmission

(2019) Colombo et al.   Cells

Glutamate receptors in domestication and modern human evolution

(2019) Thomas O’Rourke et al.   NEUROSCIENCE AND BIOBEHAVIORAL REVIEWS

Consistent inverse correlation between DNA methylation of the first intron and gene expression across tissues and species

(2018) Dafni Anastasiadi et al.   Epigenetics & Chromatin

Distal regulatory elements identified by methylation and hydroxymethylation haplotype blocks from mouse brain

(2018) Qin Ma et al.   Epigenetics & Chromatin

DNA methylation/hydroxymethylation regulate gene expression and alternative splicing during terminal granulopoiesis

(2018) Dadi Gao et al.   Epigenomics

Somatotropic Axis Regulation Unravels the Differential Effects of Nutritional and Environmental Factors in Growth Performance of Marine Farmed Fishes

(2018) Jaume Pérez-Sánchez et al.   Frontiers in Endocrinology

Altered hydroxymethylation is seen at regulatory regions in pancreatic cancer and regulates oncogenic pathways

(2017) Sanchari Bhattacharyya et al.   GENOME RESEARCH

Prenatal Growth Patterns and Birthweight Are Associated With Differential DNA Methylation and Gene Expression of Cardiometabolic Risk Genes in Human Placentas: A Discovery-Based Approach

(2017) Pao-Yang Chen et al.   Reproductive Sciences

Epigenome-wide association study in hepatocellular carcinoma: Identification of stochastic epigenetic mutations through an innovative statistical approach

(2017) Davide Gentilini et al.   Oncotarget

Gene-body 5-hydroxymethylation is associated with gene expression changes in the prefrontal cortex of depressed individuals

(2017) J A Gross et al.   Translational Psychiatry

Genetic background and embryonic temperature affect DNA methylation and expression of myogenin and muscle development in Atlantic salmon (Salmo salar)

(2017) Erik Burgerhout et al.   PLoS One

A Little Goes a Long Way: Improved growth in Atlantic cod (Gadus morhua) fed small amounts of wild zooplankton

(2016) T. Katan et al.   AQUACULTURE

MultiQC: summarize analysis results for multiple tools and samples in a single report

(2016) Philip Ewels et al.   BIOINFORMATICS

Association of 5-hydroxymethylation and 5-methylation of DNA cytosine with tissue-specific gene expression

(2016) V. K. Chaithanya Ponnaluri et al.   Epigenetics

Whole genome semiconductor based sequencing of farmed European sea bass ( Dicentrarchus labrax ) Mediterranean genetic stocks using a DNA pooling approach

(2016) Francesca Bertolini et al.   Marine Genomics

DNA hydroxymethylation controls cardiomyocyte gene expression in development and hypertrophy

(2016) Carolina M. Greco et al.   Nature Communications

PTPRN2 and PLC 1 promote metastatic breast cancer cell migration through PI(4,5)P2-dependent actin remodeling

(2015) C. A. Sengelaub et al.   EMBO JOURNAL

Intrauterine growth restriction disrupts developmental epigenetics around distal growth hormone response elements on the rat hepatic IGF-1 gene

(2015) Qi Fu et al.   FASEB JOURNAL

limma powers differential expression analyses for RNA-sequencing and microarray studies

(2015) Matthew E. Ritchie et al.   NUCLEIC ACIDS RESEARCH

Reading the unique DNA methylation landscape of the brain: Non-CpG methylation, hydroxymethylation, and MeCP2

(2015) Benyam Kinde et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Dynamics of DNA Hydroxymethylation in Zebrafish

(2015) Jorke H. Kamstra et al.   Zebrafish

DNA 5-hydroxymethylation in human adipose tissue differs between subcutaneous and visceral adipose tissue depots

(2015) Kerstin Rohde et al.   Epigenomics

The IGF1 P2 promoter is an epigenetic QTL for circulating IGF1 and human growth

(2015) Meriem Ouni et al.   Clinical Epigenetics

Molecular regulation of muscle development and growth in Senegalese sole larvae exposed to temperature fluctuations

(2014) Catarina Campos et al.   AQUACULTURE

Thermal plasticity of the miRNA transcriptome during Senegalese sole development

(2014) Catarina Campos et al.   BMC GENOMICS

TET enzymes and DNA hydroxymethylation in neural development and function — How critical are they?

(2014) Mafalda Santiago et al.   GENOMICS

The Growth Hormone Secretagogue Receptor: Its Intracellular Signaling and Regulation

(2014) Yue Yin et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

5-Hydroxymethylcytosine is a predominantly stable DNA modification

(2014) Martin Bachman et al.   Nature Chemistry

Up-Regulation of MicroRNA-190b Plays a Role for Decreased IGF-1 That Induces Insulin Resistance in Human Hepatocellular Carcinoma

(2014) Tzu-Min Hung et al.   PLoS One

featureCounts: an efficient general purpose program for assigning sequence reads to genomic features

(2013) Y. Liao et al.   BIOINFORMATICS

Intronic Non-CG DNA hydroxymethylation and alternative mRNA splicing in honey bees

(2013) Pablo Cingolani et al.   BMC GENOMICS

Temperature affects methylation of themyogeninputative promoter, its expression and muscle cellularity in Senegalese sole larvae

(2013) Catarina Campos et al.   Epigenetics

Incubation temperature induces changes in muscle cellularity and gene expression in Senegalese sole (Solea senegalensis)

(2013) Catarina Campos et al.   GENE

The role of prolactin in fish reproduction

(2013) Camilla M. Whittington et al.   GENERAL AND COMPARATIVE ENDOCRINOLOGY

The Subread aligner: fast, accurate and scalable read mapping by seed-and-vote

(2013) Yang Liao et al.   NUCLEIC ACIDS RESEARCH

What determines growth potential and juvenile quality of farmed fish species?

(2013) Luísa M.P. Valente et al.   Reviews in Aquaculture

Traumatic Brain Injury Increased IGF-1B mRNA and Altered IGF-1 Exon 5 and Promoter Region Epigenetic Characteristics in the Rat Pup Hippocampus

(2012) Michelle E. Schober et al.   JOURNAL OF NEUROTRAUMA

First Exon Length Controls Active Chromatin Signatures and Transcription

(2012) Nicole I. Bieberstein et al.   Cell Reports

Genome-wide analysis of 5-hydroxymethylcytosine distribution reveals its dual function in transcriptional regulation in mouse embryonic stem cells

(2011) H. Wu et al.   GENES & DEVELOPMENT

Tissue type is a major modifier of the 5-hydroxymethylcytosine content of human genes

(2011) C. E. Nestor et al.   GENOME RESEARCH

Genome-wide mapping of 5-hydroxymethylcytosine in embryonic stem cells

(2011) William A. Pastor et al.   NATURE

5-hmC–mediated epigenetic dynamics during postnatal neurodevelopment and aging

(2011) Keith E Szulwach et al.   NATURE NEUROSCIENCE

Uncovering the role of 5-hydroxymethylcytosine in the epigenome

(2011) Miguel R. Branco et al.   NATURE REVIEWS GENETICS

Perspectives on concordant and discordant relations between insulin-like growth factor 1 (IGF1) and growth in fishes

(2010) Brian R. Beckman   GENERAL AND COMPARATIVE ENDOCRINOLOGY

Tissue Distribution of 5-Hydroxymethylcytosine and Search for Active Demethylation Intermediates

(2010) Daniel Globisch et al.   PLoS One

Zebrafish miR-1 and miR-133 shape muscle gene expression and regulate sarcomeric actin organization

(2009) Y. Mishima et al.   GENES & DEVELOPMENT

Changes in the expression of insulin-like growth factor 1 variants in the postnatal brain development and in neonatal hypoxia–ischaemia

(2009) Małgorzata Beręsewicz et al.   INTERNATIONAL JOURNAL OF DEVELOPMENTAL NEUROSCIENCE

Dietary lipid levels have a remarkable impact on the expression of growth-related genes in Senegalese sole (Solea senegalensis Kaup)

(2009) C. Campos et al.   JOURNAL OF EXPERIMENTAL BIOLOGY

Epigenetic responses to environmental change and their evolutionary implications

(2009) B. M. Turner   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Conversion of 5-Methylcytosine to 5-Hydroxymethylcytosine in Mammalian DNA by MLL Partner TET1

(2009) M. Tahiliani et al.   SCIENCE

Simultaneous deletion of ghrelin and its receptor increases motor activity and energy expenditure

(2007) Paul T. Pfluger et al.   AMERICAN JOURNAL OF PHYSIOLOGY-GASTROINTESTINAL AND LIVER PHYSIOLOGY

Relationships between environmental changes, maturity, growth rate and plasma insulin-like growth factor-I (IGF-I) in female rainbow trout

(2007) J.F. Taylor et al.   GENERAL AND COMPARATIVE ENDOCRINOLOGY