Association of 5-hydroxymethylation and 5-methylation of DNA cytosine with tissue-specific gene expression
Published 2016 View Full Article
- Home
- Publications
- Publication Search
- Publication Details
Title
Association of 5-hydroxymethylation and 5-methylation of DNA cytosine with tissue-specific gene expression
Authors
Keywords
-
Journal
Epigenetics
Volume 12, Issue 2, Pages 123-138
Publisher
Informa UK Limited
Online
2016-12-03
DOI
10.1080/15592294.2016.1265713
References
Ask authors/readers for more resources
Related references
Note: Only part of the references are listed.- Hydroxymethylation is uniquely distributed within term placenta, and is associated with gene expression
- (2016) Benjamin B. Green et al. FASEB JOURNAL
- Role of TET enzymes in DNA methylation, development, and cancer
- (2016) Kasper Dindler Rasmussen et al. GENES & DEVELOPMENT
- Tumour hypoxia causes DNA hypermethylation by reducing TET activity
- (2016) Bernard Thienpont et al. NATURE
- Systematic identification of protein combinations mediating chromatin looping
- (2016) Kai Zhang et al. Nature Communications
- The Influence of Hydroxylation on Maintaining CpG Methylation Patterns: A Hidden Markov Model Approach
- (2016) Pascal Giehr et al. PLoS Computational Biology
- DNA Methylation in Skeletal Muscle Stem Cell Specification, Proliferation, and Differentiation
- (2016) Rhianna C. Laker et al. Stem Cells International
- Heterozygous deletion of α-neurexin I or α-neurexin II results in behaviors relevant to autism and schizophrenia.
- (2015) James Dachtler et al. BEHAVIORAL NEUROSCIENCE
- Characterizing 5-hydroxymethylcytosine in human prefrontal cortex at single base resolution
- (2015) Jeffrey A. Gross et al. BMC GENOMICS
- Loss of 5-hydroxymethylcytosine is linked to gene body hypermethylation in kidney cancer
- (2015) Ke Chen et al. CELL RESEARCH
- The interplay of histone modifications - writers that read
- (2015) T. Zhang et al. EMBO REPORTS
- Tissue-specific epigenetics in gene neighborhoods: myogenic transcription factor genes
- (2015) Sruti Chandra et al. HUMAN MOLECULAR GENETICS
- Modulation of satellite cells activity and MyoD in rat thyroarytenoid muscle after reinnervation
- (2015) Haruka Kodama et al. LARYNGOSCOPE
- Tet1 and Tet2 Protect DNA Methylation Canyons against Hypermethylation
- (2015) Laura Wiehle et al. MOLECULAR AND CELLULAR BIOLOGY
- Bhlhe40 Represses PGC-1α Activity on Metabolic Gene Promoters in Myogenic Cells
- (2015) Shih Ying Chung et al. MOLECULAR AND CELLULAR BIOLOGY
- Integrative analysis of 111 reference human epigenomes
- (2015) Anshul Kundaje et al. NATURE
- Inter-individual variability contrasts with regional homogeneity in the human brain DNA methylome
- (2015) Robert S. Illingworth et al. NUCLEIC ACIDS RESEARCH
- The Genotype-Tissue Expression (GTEx) pilot analysis: Multitissue gene regulation in humans
- (2015) et al. SCIENCE
- The alternative role of DNA methylation in splicing regulation
- (2015) Galit Lev Maor et al. TRENDS IN GENETICS
- DNA demethylation by 5-aza-2′-deoxycytidine is imprinted, targeted to euchromatin, and has limited transcriptional consequences
- (2015) María-Paz Ramos et al. Epigenetics & Chromatin
- TET3 Is Recruited by REST for Context-Specific Hydroxymethylation and Induction of Gene Expression
- (2015) Arshan Perera et al. Cell Reports
- On the presence and role of human gene-body DNA methylation
- (2015) Daudi Jjingo et al. Oncotarget
- H3K4me3 Breadth Is Linked to Cell Identity and Transcriptional Consistency
- (2014) Bérénice A. Benayoun et al. CELL
- Redox Regulation by Pitx2 and Pitx3 Is Critical for Fetal Myogenesis
- (2014) Aurore L’honoré et al. DEVELOPMENTAL CELL
- An integrative analysis reveals coordinated reprogramming of the epigenome and the transcriptome in human skeletal muscle after training
- (2014) Maléne E Lindholm et al. Epigenetics
- Notch signaling genes
- (2014) Jolyon Terragni et al. Epigenetics
- Greater organ involution in highly proliferative tissues associated with the early onset and acceleration of ageing in humans
- (2014) Richard B. Richardson et al. EXPERIMENTAL GERONTOLOGY
- Pitx2 and Pitx3 transcription factors: two key regulators of the redox state in adult skeletal muscle stem cells and muscle regeneration
- (2014) Aurore L'honoré et al. FREE RADICAL BIOLOGY AND MEDICINE
- New themes in the biological functions of 5-methylcytosine and 5-hydroxymethylcytosine
- (2014) Erika L. Moen et al. IMMUNOLOGICAL REVIEWS
- 5mC Oxidation by Tet2 Modulates Enhancer Activity and Timing of Transcriptome Reprogramming during Differentiation
- (2014) Gary C. Hon et al. MOLECULAR CELL
- TET1 is a maintenance DNA demethylase that prevents methylation spreading in differentiated cells
- (2014) C. Jin et al. NUCLEIC ACIDS RESEARCH
- Architectural proteins CTCF and cohesin have distinct roles in modulating the higher order structure and expression of the CFTR locus
- (2014) N. Gosalia et al. NUCLEIC ACIDS RESEARCH
- Dissecting the dynamic changes of 5-hydroxymethylcytosine in T-cell development and differentiation
- (2014) A. Tsagaratou et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- DNA cytosine methylation and hydroxymethylation at the borders
- (2014) Melanie Ehrlich et al. Epigenomics
- Whole-genome analysis of 5-hydroxymethylcytosine and 5-methylcytosine at base resolution in the human brain
- (2014) Lu Wen et al. GENOME BIOLOGY
- Dynamic Readers for 5-(Hydroxy)Methylcytosine and Its Oxidized Derivatives
- (2013) Cornelia G. Spruijt et al. CELL
- Pitx genes are redeployed in adult myogenesis where they can act to promote myogenic differentiation in muscle satellite cells
- (2013) Paul Knopp et al. DEVELOPMENTAL BIOLOGY
- Early de novo DNA methylation and prolonged demethylation in the muscle lineage
- (2013) Koji Tsumagari et al. Epigenetics
- Dynamic DNA methylation across diverse human cell lines and tissues
- (2013) K. E. Varley et al. GENOME RESEARCH
- Histone methyltransferase SETD2 coordinates FACT recruitment with nucleosome dynamics during transcription
- (2013) Sílvia Carvalho et al. NUCLEIC ACIDS RESEARCH
- IL1RAPL1 Associated with Mental Retardation and Autism Regulates the Formation and Stabilization of Glutamatergic Synapses of Cortical Neurons through RhoA Signaling Pathway
- (2013) Takashi Hayashi et al. PLoS One
- A Reference Methylome Database and Analysis Pipeline to Facilitate Integrative and Comparative Epigenomics
- (2013) Qiang Song et al. PLoS One
- Global Epigenomic Reconfiguration During Mammalian Brain Development
- (2013) R. Lister et al. SCIENCE
- Modeling, simulation and analysis of methylation profiles from reduced representation bisulfite sequencing experiments
- (2013) Michelle R. Lacey et al. Statistical Applications in Genetics and Molecular Biology
- DNA methylation and differentiation: HOX genes in muscle cells
- (2013) Koji Tsumagari et al. Epigenetics & Chromatin
- Genome-wide analysis identifies a functional association of Tet1 and Polycomb repressive complex 2 in mouse embryonic stem cells
- (2013) Francesco Neri et al. GENOME BIOLOGY
- Cadherins and neuropsychiatric disorders
- (2012) Christoph Redies et al. BRAIN RESEARCH
- Diametrically opposite methylome-transcriptome relationships in high- and low-CpG promoter genes in postmitotic neural rat tissue
- (2012) Theresa Hartung et al. Epigenetics
- Protection against De Novo Methylation Is Instrumental in Maintaining Parent-of-Origin Methylation Inherited from the Gametes
- (2012) Charlotte Proudhon et al. MOLECULAR CELL
- Factorbook.org: a Wiki-based database for transcription factor-binding data generated by the ENCODE consortium
- (2012) J. Wang et al. NUCLEIC ACIDS RESEARCH
- Quantitative Sequencing of 5-Methylcytosine and 5-Hydroxymethylcytosine at Single-Base Resolution
- (2012) M. J. Booth et al. SCIENCE
- The NIH Roadmap Epigenomics Program data resource
- (2012) Lisa Helbling Chadwick Epigenomics
- Cell type-specific DNA methylation at intragenic CpG islands in the immune system
- (2011) A. M. Deaton et al. GENOME RESEARCH
- Tissue type is a major modifier of the 5-hydroxymethylcytosine content of human genes
- (2011) C. E. Nestor et al. GENOME RESEARCH
- Open chromatin defined by DNaseI and FAIRE identifies regulatory elements that shape cell-type identity
- (2011) L. Song et al. GENOME RESEARCH
- O2 Regulates Skeletal Muscle Progenitor Differentiation through Phosphatidylinositol 3-Kinase/AKT Signaling
- (2011) A. J. Majmundar et al. MOLECULAR AND CELLULAR BIOLOGY
- CTCF-promoted RNA polymerase II pausing links DNA methylation to splicing
- (2011) Sanjeev Shukla et al. NATURE
- Mapping and analysis of chromatin state dynamics in nine human cell types
- (2011) Jason Ernst et al. NATURE
- A User's Guide to the Encyclopedia of DNA Elements (ENCODE)
- (2011) PLOS BIOLOGY
- Myogenic regulatory factors regulate M-cadherin expression by targeting its proximal promoter elements
- (2010) Sheng Pin Hsiao et al. BIOCHEMICAL JOURNAL
- Genome-wide MyoD Binding in Skeletal Muscle Cells: A Potential for Broad Cellular Reprogramming
- (2010) Yi Cao et al. DEVELOPMENTAL CELL
- Conserved role of intragenic DNA methylation in regulating alternative promoters
- (2010) Alika K. Maunakea et al. NATURE
- Tissue Distribution of 5-Hydroxymethylcytosine and Search for Active Demethylation Intermediates
- (2010) Daniel Globisch et al. PLoS One
- CTCF: Master Weaver of the Genome
- (2009) Jennifer E. Phillips et al. CELL
- The Nuclear DNA Base 5-Hydroxymethylcytosine Is Present in Purkinje Neurons and the Brain
- (2009) S. Kriaucionis et al. SCIENCE
- Identification of a Novel Pool of Extracellular Pro-myostatin in Skeletal Muscle
- (2008) Sarah B. Anderson et al. JOURNAL OF BIOLOGICAL CHEMISTRY
- Alternative isoform regulation in human tissue transcriptomes
- (2008) Eric T. Wang et al. NATURE
Find the ideal target journal for your manuscript
Explore over 38,000 international journals covering a vast array of academic fields.
SearchBecome a Peeref-certified reviewer
The Peeref Institute provides free reviewer training that teaches the core competencies of the academic peer review process.
Get Started