Differences in the fast muscle methylome provide insight into sex-specific epigenetic regulation of growth in Nile tilapia during early stages of domestication

Effects of parental care on resource allocation into immune defense and buccal microbiota in mouthbrooding cichlid fishes*

(2018) Isabel S. Keller et al.   EVOLUTION

Recognition of RNA N6-methyladenosine by IGF2BP proteins enhances mRNA stability and translation

(2018) Huilin Huang et al.   NATURE CELL BIOLOGY

Genome-wide microRNA screening in Nile tilapia reveals pervasive isomiRs’ transcription, sex-biased arm switching and increasing complexity of expression throughout development

(2018) Danillo Pinhal et al.   Scientific Reports

Structural insights into the RNA methyltransferase domain of METTL16

(2018) Agnieszka Ruszkowska et al.   Scientific Reports

A Review of Genetic Advances Related to Sex Control and Manipulation in Tilapia

(2017) Jinlin Chen et al.   JOURNAL OF THE WORLD AQUACULTURE SOCIETY

Parallel epigenetic modifications induced by hatchery rearing in a Pacific salmon

(2017) Jérémy Le Luyer et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The requirement of Mettl3-promoted MyoD mRNA maintenance in proliferative myoblasts for skeletal muscle differentiation

(2017) Kensuke Kudou et al.   Open Biology

Genetic background and embryonic temperature affect DNA methylation and expression of myogenin and muscle development in Atlantic salmon (Salmo salar)

(2017) Erik Burgerhout et al.   PLoS One

Gene Expression and DNA Methylation ofPPARGC1Ain Muscle and Adipose Tissue From Adult Offspring of Women With Diabetes in Pregnancy

(2016) Louise Kelstrup et al.   DIABETES

Characterization of two novel gadd45a genes in hybrid tilapia and their responses to the infection of Streptococcus agalactiae

(2016) Yubang Shen et al.   FISH & SHELLFISH IMMUNOLOGY

Macrophage PPARγ, a Lipid Activated Transcription Factor Controls the Growth Factor GDF3 and Skeletal Muscle Regeneration

(2016) Tamas Varga et al.   IMMUNITY

Local regulation of gene expression by lncRNA promoters, transcription and splicing

(2016) Jesse M. Engreitz et al.   NATURE

A single generation of domestication heritably alters the expression of hundreds of genes

(2016) Mark R. Christie et al.   Nature Communications

Genome-wide methylation analysis identified sexually dimorphic methylated regions in hybrid tilapia

(2016) Zi Yi Wan et al.   Scientific Reports

Genome-wide DNA methylation profiles changes associated with constant heat stress in pigs as measured by bisulfite sequencing

(2016) Yue Hao et al.   Scientific Reports

Rescue of Metabolic Alterations in AR113Q Skeletal Muscle by Peripheral Androgen Receptor Gene Silencing

(2016) Elisa Giorgetti et al.   Cell Reports

Global DNA Methylation Changes in Nile Tilapia Gonads during High Temperature-Induced Masculinization

(2016) Li-Xue Sun et al.   PLoS One

Hydrodynamic drag constrains head enlargement for mouthbrooding in cichlids

(2015) Sam Van Wassenbergh et al.   Journal of the Royal Society Interface

Distinct contextual roles for Notch signalling in skeletal muscle stem cells

(2014) Philippos Mourikis et al.   BMC DEVELOPMENTAL BIOLOGY

Does relaxed predation drive phenotypic divergence among insular populations?

(2014) A. Runemark et al.   JOURNAL OF EVOLUTIONARY BIOLOGY

Evaluation of effects of multiple candidate genes (LEP,LEPR,MC4R,PIK3C3, andVRTN) on production traits in Duroc pigs

(2013) Kensuke Hirose et al.   ANIMAL SCIENCE JOURNAL

Temperature affects methylation of themyogeninputative promoter, its expression and muscle cellularity in Senegalese sole larvae

(2013) Catarina Campos et al.   Epigenetics

Gadd45gregulates dental epithelial cell proliferation through p38 MAPK-mediatedp21expression

(2013) Kentaro Ishida et al.   GENES TO CELLS

Does Domestication Cause Changes in Growth Reaction Norms? A Study of Farmed, Wild and Hybrid Atlantic Salmon Families Exposed to Environmental Stress

(2013) Monica Favnebøe Solberg et al.   PLoS One

What determines growth potential and juvenile quality of farmed fish species?

(2013) Luísa M.P. Valente et al.   Reviews in Aquaculture

A Six Months Exercise Intervention Influences the Genome-wide DNA Methylation Pattern in Human Adipose Tissue

(2013) Tina Rönn et al.   PLoS Genetics

Integrative Genomics Viewer (IGV): high-performance genomics data visualization and exploration

(2012) H. Thorvaldsdottir et al.   BRIEFINGS IN BIOINFORMATICS

Shorter Gills in Mouth-brooding Females of the Cichlid Pseudocrenilabrus multicolor

(2012) Constance M. O'Connor et al.   COPEIA

GADD45 Proteins: Central Players in Tumorigenesis

(2012) R. E. Tamura et al.   CURRENT MOLECULAR MEDICINE

An HMGA2-IGF2BP2 Axis Regulates Myoblast Proliferation and Myogenesis

(2012) Zhizhong Li et al.   DEVELOPMENTAL CELL

Levels of domestication in fish: implications for the sustainable future of aquaculture

(2012) Fabrice Teletchea et al.   FISH AND FISHERIES

Differential expression patterns of growth-related microRNAs in the skeletal muscle of Nile tilapia (Oreochromis niloticus)1

(2012) C. W. Huang et al.   JOURNAL OF ANIMAL SCIENCE

The Autophagy-related Gene 14 (Atg14) Is Regulated by Forkhead Box O Transcription Factors and Circadian Rhythms and Plays a Critical Role in Hepatic Autophagy and Lipid Metabolism

(2012) Xiwen Xiong et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Stress-induced Skeletal Muscle Gadd45a Expression Reprograms Myonuclei and Causes Muscle Atrophy

(2012) Scott M. Ebert et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

TGF-β-activated Kinase 1 (TAK1) and Apoptosis Signal-regulating Kinase 1 (ASK1) Interact with the Promyogenic Receptor Cdo to Promote Myogenic Differentiation via Activation of p38MAPK Pathway

(2012) Phong Tran et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Fast gapped-read alignment with Bowtie 2

(2012) Ben Langmead et al.   NATURE METHODS

Photoperiod Influences Growth and mll (Mixed-Lineage Leukaemia) Expression in Atlantic Cod

(2012) Kazue Nagasawa et al.   PLoS One

Active DNA demethylation by Gadd45 and DNA repair

(2012) Christof Niehrs et al.   TRENDS IN CELL BIOLOGY

methylKit: a comprehensive R package for the analysis of genome-wide DNA methylation profiles

(2012) Altuna Akalin et al.   GENOME BIOLOGY

Bismark: a flexible aligner and methylation caller for Bisulfite-Seq applications

(2011) Felix Krueger et al.   BIOINFORMATICS

Transforming growth factor-beta induces skeletal muscle atrophy and fibrosis through the induction of atrogin-1 and scleraxis

(2011) Christopher L. Mendias et al.   MUSCLE & NERVE

CTCF-promoted RNA polymerase II pausing links DNA methylation to splicing

(2011) Sanjeev Shukla et al.   NATURE

DNA Methylation of the First Exon Is Tightly Linked to Transcriptional Silencing

(2011) Fabienne Brenet et al.   PLoS One

An in vivo and in vitro assessment of autophagy-related gene expression in muscle of rainbow trout (Oncorhynchus mykiss)

(2010) Iban Seiliez et al.   COMPARATIVE BIOCHEMISTRY AND PHYSIOLOGY B-BIOCHEMISTRY & MOLECULAR BIOLOGY

Trade-off between growth and immune function: a meta-analysis of selection experiments

(2010) Peter J. van der Most et al.   FUNCTIONAL ECOLOGY

DNA Methyltransferase 1-associated Protein (DMAP1) Is a Co-repressor That Stimulates DNA Methylation Globally and Locally at Sites of Double Strand Break Repair

(2010) Gun E. Lee et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Estrogen-related Receptor γ Is a Key Regulator of Muscle Mitochondrial Activity and Oxidative Capacity

(2010) Shamina M. Rangwala et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Simple Combinations of Lineage-Determining Transcription Factors Prime cis-Regulatory Elements Required for Macrophage and B Cell Identities

(2010) Sven Heinz et al.   MOLECULAR CELL

Conserved role of intragenic DNA methylation in regulating alternative promoters

(2010) Alika K. Maunakea et al.   NATURE

Non-CpG Methylation of the PGC-1α Promoter through DNMT3B Controls Mitochondrial Density

(2009) Romain Barrès et al.   Cell Metabolism

Circos: An information aesthetic for comparative genomics

(2009) M. Krzywinski et al.   GENOME RESEARCH

Epigenetics: Connecting Environment and Genotype to Phenotype and Disease

(2009) S.P. Barros et al.   JOURNAL OF DENTAL RESEARCH

Neogenin Regulates Skeletal Myofiber Size and Focal Adhesion Kinase and Extracellular Signal-regulated Kinase Activities In Vivo and In Vitro

(2009) Gyu-Un Bae et al.   MOLECULAR BIOLOGY OF THE CELL

Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources

(2009) Da Wei Huang et al.   Nature Protocols

A High-Resolution Structure of the Pre-microRNA Nuclear Export Machinery

(2009) C. Okada et al.   SCIENCE

β2-Integrins contribute to skeletal muscle hypertrophy in mice

(2008) Joseph S. Marino et al.   AMERICAN JOURNAL OF PHYSIOLOGY-CELL PHYSIOLOGY

PGC-1α-mediated regulation of gene expression and metabolism: implications for nutrition and exercise prescriptions

(2008) Carley R. Benton et al.   Applied Physiology Nutrition and Metabolism

Leptin Promotes Proliferation and Inhibits Differentiation in Porcine Skeletal Myoblasts

(2008) Taiyong YU et al.   BIOSCIENCE BIOTECHNOLOGY AND BIOCHEMISTRY

Expression of growth-related genes in muscle during fasting and refeeding of juvenile Atlantic halibut, Hippoglossus hippoglossus L.

(2008) Ørjan Hagen et al.   COMPARATIVE BIOCHEMISTRY AND PHYSIOLOGY B-BIOCHEMISTRY & MOLECULAR BIOLOGY

Myogenin regulates a distinct genetic program in adult muscle stem cells

(2008) Eric Meadows et al.   DEVELOPMENTAL BIOLOGY

Gender Dimorphism in Skeletal Muscle Leptin Receptors, Serum Leptin and Insulin Sensitivity

(2008) Borja Guerra et al.   PLoS One