Small RNA expression and miRNA modification dynamics in human oocytes and early embryos

On transposons and totipotency

(2020) Maria-Elena Torres-Padilla   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Diversity of RNA-Binding Proteins Modulating Post-Transcriptional Regulation of Protein Expression in the Maturing Mammalian Oocyte

(2020) Marie Christou-Kent et al.   Cells

MicroRNA dilution during oocyte growth disables the microRNA pathway in mammalian oocytes

(2020) Shubhangini Kataruka et al.   NUCLEIC ACIDS RESEARCH

sRNAbench and sRNAtoolbox 2019: intuitive fast small RNA profiling and differential expression

(2019) Ernesto Aparicio-Puerta et al.   NUCLEIC ACIDS RESEARCH

Identification of small non-coding RNAs as sperm quality biomarkers for in vitro fertilization

(2019) Minmin Hua et al.   Cell Discovery

Single-cell CAS-seq reveals a class of short PIWI-interacting RNAs in human oocytes

(2019) Qiyuan Yang et al.   Nature Communications

Complement in Human Pre-implantation Embryos: Attack and Defense

(2019) Martin P. Reichhardt et al.   Frontiers in Immunology

Restricted and non-essential redundancy of RNAi and piRNA pathways in mouse oocytes

(2019) Eliska Taborska et al.   PLoS Genetics

Phase Transitions in the Assembly and Function of Human miRISC

(2018) Jessica Sheu-Gruttadauria et al.   CELL

Metazoan MicroRNAs

(2018) David P. Bartel   CELL

Regulation of microRNA function in animals

(2018) Luca F. R. Gebert et al.   NATURE REVIEWS MOLECULAR CELL BIOLOGY

PIWI-interacting RNAs: small RNAs with big functions

(2018) Deniz M. Ozata et al.   NATURE REVIEWS GENETICS

miRBase: from microRNA sequences to function

(2018) Ana Kozomara et al.   NUCLEIC ACIDS RESEARCH

Loss of microRNA-7a2 induces hypogonadotropic hypogonadism and infertility

(2017) Kashan Ahmed et al.   JOURNAL OF CLINICAL INVESTIGATION

Differential expression analysis for RNAseq using Poisson mixed models

(2017) Shiquan Sun et al.   NUCLEIC ACIDS RESEARCH

Degradation dynamics of microRNAs revealed by a novel pulse-chase approach

(2016) Matteo J. Marzi et al.   GENOME RESEARCH

Highly sensitive sequencing reveals dynamic modifications and activities of small RNAs in mouse oocytes and early embryos

(2016) Q. Yang et al.   Science Advances

A Uniform System for the Annotation of Vertebrate microRNA Genes and the Evolution of the Human microRNAome

(2015) Bastian Fromm et al.   Annual Review of Genetics

Potent degradation of neuronal miRNAs induced by highly complementary targets

(2015) M. de la Mata et al.   EMBO REPORTS

An allelic series of miR-17∼92–mutant mice uncovers functional specialization and cooperation among members of a microRNA polycistron

(2015) Yoon-Chi Han et al.   NATURE GENETICS

limma powers differential expression analyses for RNA-sequencing and microarray studies

(2015) Matthew E. Ritchie et al.   NUCLEIC ACIDS RESEARCH

sRNAtoolbox: an integrated collection of small RNA research tools

(2015) Antonio Rueda et al.   NUCLEIC ACIDS RESEARCH

Novel PRD-like homeodomain transcription factors and retrotransposon elements in early human development

(2015) Virpi Töhönen et al.   Nature Communications

Discovery and Characterization of piRNAs in the Human Fetal Ovary

(2015) Zev Williams et al.   Cell Reports

Essential Role for Endogenous siRNAs during Meiosis in Mouse Oocytes

(2015) Paula Stein et al.   PLoS Genetics

Global characterization and target identification of piRNAs and endo-siRNAs in mouse gametes and zygotes

(2014) Jesús García-López et al.   Biochimica et Biophysica Acta-Gene Regulatory Mechanisms

piRNAs: from biogenesis to function

(2014) E.-M. Weick et al.   DEVELOPMENT

Adenylation of Maternally Inherited MicroRNAs by Wispy

(2014) Mihye Lee et al.   MOLECULAR CELL

Regulation of microRNA biogenesis

(2014) Minju Ha et al.   NATURE REVIEWS MOLECULAR CELL BIOLOGY

Phenotypic Characterization of miR-92a−/− Mice Reveals an Important Function of miR-92a in Skeletal Development

(2014) Daniela Penzkofer et al.   PLoS One

Cellular microRNAs up-regulate transcription via interaction with promoter TATA-box motifs

(2014) Yijun Zhang et al.   RNA

voom: precision weights unlock linear model analysis tools for RNA-seq read counts

(2014) Charity W Law et al.   GENOME BIOLOGY

Single-cell RNA-Seq profiling of human preimplantation embryos and embryonic stem cells

(2013) Liying Yan et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

miRBase: annotating high confidence microRNAs using deep sequencing data

(2013) Ana Kozomara et al.   NUCLEIC ACIDS RESEARCH

Expression dynamics of microRNA biogenesis during preimplantation mouse development

(2012) Jesús García-López et al.   Biochimica et Biophysica Acta-Gene Regulatory Mechanisms

MicroRNA expression in the human blastocyst

(2012) Evan M. Rosenbluth et al.   FERTILITY AND STERILITY

Analysis of microRNAs and their precursors in bovine early embryonic development

(2012) E. Mondou et al.   MOLECULAR HUMAN REPRODUCTION

IsomiRs – the overlooked repertoire in the dynamic microRNAome

(2012) Corine T. Neilsen et al.   TRENDS IN GENETICS

Small RNAs in early mammalian development: from gametes to gastrulation

(2011) N. Suh et al.   DEVELOPMENT

Post-transcriptional generation of miRNA variants by multiple nucleotidyl transferases contributes to miRNA transcriptome complexity

(2011) S. K. Wyman et al.   GENOME RESEARCH

MicroRNA-9 Regulates Neurogenesis in Mouse Telencephalon by Targeting Multiple Transcription Factors

(2011) M. Shibata et al.   JOURNAL OF NEUROSCIENCE

miRDeep2 accurately identifies known and hundreds of novel microRNA genes in seven animal clades

(2011) Marc R. Friedländer et al.   NUCLEIC ACIDS RESEARCH

Posttranscriptional activation of gene expression in Xenopus laevis oocytes by microRNA-protein complexes (microRNPs)

(2011) R. D. Mortensen et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Translational Control in Oocyte Development

(2011) J. D. Richter et al.   Cold Spring Harbor Perspectives in Biology

BEDTools: a flexible suite of utilities for comparing genomic features

(2010) Aaron R. Quinlan et al.   BIOINFORMATICS

MicroRNA Activity Is Suppressed in Mouse Oocytes

(2010) Jun Ma et al.   CURRENT BIOLOGY

MicroRNA Function Is Globally Suppressed in Mouse Oocytes and Early Embryos

(2010) Nayoung Suh et al.   CURRENT BIOLOGY

Argonaute-mediated translational repression (and activation)

(2010) Shintaro Iwasaki et al.   FLY

A comprehensive survey of 3' animal miRNA modification events and a possible role for 3' adenylation in modulating miRNA targeting effectiveness

(2010) A. M. Burroughs et al.   GENOME RESEARCH

MicroRNA assassins: factors that regulate the disappearance of miRNAs

(2010) Zoya S Kai et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

Small RNA class transition from siRNA/piRNA to miRNA during pre-implantation mouse development

(2010) Yusuke Ohnishi et al.   NUCLEIC ACIDS RESEARCH

Dynamic isomiR regulation in Drosophila development

(2010) S. L. Fernandez-Valverde et al.   RNA

Target RNA-Directed Trimming and Tailing of Small Silencing RNAs

(2010) S. L. Ameres et al.   SCIENCE

Aberration of blastocyst microRNA expression is associated with human infertility

(2009) Blair McCallie et al.   FERTILITY AND STERILITY

Selective stabilization of mammalian microRNAs by 3' adenylation mediated by the cytoplasmic poly(A) polymerase GLD-2

(2009) T. Katoh et al.   GENES & DEVELOPMENT

Zcchc11-dependent uridylation of microRNA directs cytokine expression

(2009) Matthew R. Jones et al.   NATURE CELL BIOLOGY

Deadenylation of maternal mRNAs mediated by miR-427 in Xenopus laevis embryos

(2009) E. Lund et al.   RNA

Essential role for Argonaute2 protein in mouse oogenesis

(2009) Masahiro Kaneda et al.   Epigenetics & Chromatin

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

(2009) Ben Langmead et al.   GENOME BIOLOGY

Temporal Reciprocity of miRNAs and Their Targets during the Maternal-to-Zygotic Transition in Drosophila

(2008) Natascha Bushati et al.   CURRENT BIOLOGY

Mouse ES cells express endogenous shRNAs, siRNAs, and other Microprocessor-independent, Dicer-dependent small RNAs

(2008) J. E. Babiarz et al.   GENES & DEVELOPMENT

Endogenous siRNAs from naturally formed dsRNAs regulate transcripts in mouse oocytes

(2008) Toshiaki Watanabe et al.   NATURE

MicroRNA-373 induces expression of genes with complementary promoter sequences

(2008) R. F. Place et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA