Multiple Losses of MSH1, Gain of mtMutS, and Other Changes in the MutS Family of DNA Repair Proteins in Animals

Widespread patterns of gene loss in the evolution of the animal kingdom

(2020) Cristina Guijarro-Clarke et al.   Nature Ecology & Evolution

MSH1is required for maintenance of the low mutation rates in plant mitochondrial and plastid genomes

(2020) Zhiqiang Wu et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Interactive Tree Of Life (iTOL) v4: recent updates and new developments

(2019) Ivica Letunic et al.   NUCLEIC ACIDS RESEARCH

DeepMito: accurate prediction of protein sub-mitochondrial localization using convolutional neural networks

(2019) Castrense Savojardo et al.   BIOINFORMATICS

The joint evolution of the Myxozoa and their alternate hosts: A cnidarian recipe for success and vast biodiversity

(2018) Astrid S. Holzer et al.   MOLECULAR ECOLOGY

Host-microbe interactions in octocoral holobionts - recent advances and perspectives

(2018) Jeroen A. J. M. van de Water et al.   Microbiome

Characterization of mitochondrial proteomes of nonbilaterian animals

(2018) Viraj Muthye et al.   IUBMB LIFE

Mechanisms of DNA damage, repair, and mutagenesis

(2017) Nimrat Chatterjee et al.   ENVIRONMENTAL AND MOLECULAR MUTAGENESIS

DNA Repair in Drosophila : Mutagens, Models, and Missing Genes

(2017) Jeff Sekelsky   GENETICS

DNA mismatch repair and its many roles in eukaryotic cells

(2017) Dekang Liu et al.   MUTATION RESEARCH-REVIEWS IN MUTATION RESEARCH

The Devil is in the details for DNA mismatch repair

(2017) Peggy Hsieh et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

DNA Repair in Drosophila : Mutagens, Models, and Missing Genes

(2017) Jeff Sekelsky   GENETICS

Animal Mitochondrial DNA as We Do Not Know It: mt-Genome Organization and Evolution in Nonbilaterian Lineages

(2016) Dennis V. Lavrov et al.   Genome Biology and Evolution

MitoFates: Improved Prediction of Mitochondrial Targeting Sequences and Their Cleavage Sites

(2015) Yoshinori Fukasawa et al.   MOLECULAR & CELLULAR PROTEOMICS

RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies

(2014) Alexandros Stamatakis   BIOINFORMATICS

Deciphering key features in protein structures with the new ENDscript server

(2014) Xavier Robert et al.   NUCLEIC ACIDS RESEARCH

UniProt: a hub for protein information

(2014)   NUCLEIC ACIDS RESEARCH

MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability

(2013) K. Katoh et al.   MOLECULAR BIOLOGY AND EVOLUTION

Different Roles of Eukaryotic MutS and MutL Complexes in Repair of Small Insertion and Deletion Loops in Yeast

(2013) Nina V. Romanova et al.   PLoS Genetics

MITOS: Improved de novo metazoan mitochondrial genome annotation

(2012) Matthias Bernt et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

A unique horizontal gene transfer event has provided the octocoral mitochondrial genome with an active mismatch repair gene that has potential for an unusual self-contained function

(2011) Jaret P Bilewitch et al.   BMC EVOLUTIONARY BIOLOGY

Description of viral assemblages associated with the Gorgonia ventalina holobiont

(2011) I. Hewson et al.   CORAL REEFS

Two new subfamilies of DNA mismatch repair proteins (MutS) specifically abundant in the marine environment

(2011) Hiroyuki Ogata et al.   ISME Journal

Mechanism of mismatch recognition revealed by human MutSβ bound to unpaired DNA loops

(2011) Shikha Gupta et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

Accelerated Profile HMM Searches

(2011) Sean R. Eddy   PLoS Computational Biology

trimAl: a tool for automated alignment trimming in large-scale phylogenetic analyses

(2009) S. Capella-Gutierrez et al.   BIOINFORMATICS

BLAST+: architecture and applications

(2009) Christiam Camacho et al.   BMC BIOINFORMATICS

Novel DNA mismatch-repair activity involving YB-1 in human mitochondria

(2009) Nadja C. de Souza-Pinto et al.   DNA REPAIR

Evidence That Msh1p Plays Multiple Roles in Mitochondrial Base Excision Repair

(2009) L. Pogorzala et al.   GENETICS

Msh1p counteracts oxidative lesion-induced instability of mtDNA and stimulates mitochondrial recombination in Saccharomyces cerevisiae

(2008) Aneta Kaniak et al.   DNA REPAIR

DNA mismatch repair: Molecular mechanism, cancer, and ageing

(2008) Peggy Hsieh et al.   MECHANISMS OF AGEING AND DEVELOPMENT