Clinal and seasonal changes are correlated in Drosophila melanogaster natural populations

Estimating the genome-wide contribution of selection to temporal allele frequency change

(2020) Vince Buffalo et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Microbiome composition shapes rapid genomic adaptation of Drosophila melanogaster

(2019) Seth M. Rudman et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Rapid seasonal evolution in innate immunity of wild Drosophila melanogaster

(2018) Emily L. Behrman et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Measuring Genetic Differentiation from Pool-seq Data

(2018) Valentin Hivert et al.   GENETICS

The adaptive significance of chromosomal inversion polymorphisms in Drosophila melanogaster

(2018) Martin Kapun et al.   MOLECULAR ECOLOGY

Seasonally fluctuating selection can maintain polymorphism at many loci via segregation lift

(2017) Meike J. Wittmann et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

On the Long-term Stability of Clines in Some Metabolic Genes in Drosophila melanogaster

(2017) Rodrigo Cogni et al.   Scientific Reports

A statistical method for the detection of variants from next-generation resequencing of DNA poolsA probabilistic method for the detection and genotyping of small indels from population-scale sequence data

(2016) Vikas Bansal et al.   BIOINFORMATICS

Adaptive dynamics of cuticular hydrocarbons inDrosophila

(2016) S. Rajpurohit et al.   JOURNAL OF EVOLUTIONARY BIOLOGY

Genomic Evidence for Adaptive Inversion Clines inDrosophila melanogaster

(2016) Martin Kapun et al.   MOLECULAR BIOLOGY AND EVOLUTION

Parallel Evolution of Copy-Number Variation across Continents inDrosophila melanogaster

(2016) Daniel R. Schrider et al.   MOLECULAR BIOLOGY AND EVOLUTION

Comparative population genomics of latitudinal variation inDrosophila simulansandDrosophila melanogaster

(2016) Heather E. Machado et al.   MOLECULAR ECOLOGY

Secondary contact and local adaptation contribute to genome-wide patterns of clinal variation inDrosophila melanogaster

(2016) Alan O. Bergland et al.   MOLECULAR ECOLOGY

Genomics of clinal variation inDrosophila: disentangling the interactions of selection and demography

(2016) Thomas Flatt   MOLECULAR ECOLOGY

FlyBase at 25: looking to the future

(2016) L. Sian Gramates et al.   NUCLEIC ACIDS RESEARCH

Seasonal variation in life history traits in twoDrosophilaspecies

(2015) E. L. Behrman et al.   JOURNAL OF EVOLUTIONARY BIOLOGY

Population genomic analysis uncovers African and European admixture inDrosophila melanogasterpopulations from the south-eastern United States and Caribbean Islands

(2015) Joyce Y. Kao et al.   MOLECULAR ECOLOGY

Revisiting classic clines in Drosophila melanogaster in the age of genomics

(2015) Jeffrey R. Adrion et al.   TRENDS IN GENETICS

A highly pleiotropic amino acid polymorphism in theDrosophilainsulin receptor contributes to life-history adaptation

(2014) Annalise B. Paaby et al.   EVOLUTION

Parallel Geographic Variation in Drosophila melanogaster

(2014) Josie A. Reinhardt et al.   GENETICS

Population-Genetic Inference from Pooled-Sequencing Data

(2014) Michael Lynch et al.   Genome Biology and Evolution

A Small System—High-Resolution Study of Metabolic Adaptation in the Central Metabolic Pathway to Temperate Climates in Drosophila melanogaster

(2014) Erik Lavington et al.   MOLECULAR BIOLOGY AND EVOLUTION

Replicate altitudinal clines reveal that evolutionary flexibility underlies adaptation to drought stress in annualMimulus guttatus

(2014) Nicholas J. Kooyers et al.   NEW PHYTOLOGIST

Variation in Drosophila melanogaster central metabolic genes appears driven by natural selection both within and between populations

(2014) R. Cogni et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Genomic Evidence of Rapid and Stable Adaptive Oscillations over Seasonal Time Scales in Drosophila

(2014) Alan O. Bergland et al.   PLoS Genetics

THE INTENSITY OF SELECTION ACTING ON THECOUCH POTATOGENE-SPATIAL-TEMPORAL VARIATION IN A DIAPAUSE CLINE

(2013) Rodrigo Cogni et al.   EVOLUTION

Inference of chromosomal inversion dynamics from Pool-Seq data in natural and laboratory populations ofDrosophila melanogaster

(2013) Martin Kapun et al.   MOLECULAR ECOLOGY

Gowinda: unbiased analysis of gene set enrichment for genome-wide association studies

(2012) R. Kofler et al.   BIOINFORMATICS

A program for annotating and predicting the effects of single nucleotide polymorphisms, SnpEff

(2012) Pablo Cingolani et al.   FLY

Demographic Inference Reveals African and European Admixture in the North American Drosophila melanogaster Population

(2012) P. Duchen et al.   GENETICS

A Critical Assessment of Storytelling: Gene Ontology Categories and the Importance of Validating Genomic Scans

(2012) Pavlos Pavlidis et al.   MOLECULAR BIOLOGY AND EVOLUTION

Natural selection maintains a single-locus leaf shape cline in Ivyleaf morning glory,Ipomoea hederacea

(2012) Brandon E. Campitelli et al.   MOLECULAR ECOLOGY

Genome-wide patterns of latitudinal differentiation among populations ofDrosophila melanogasterfrom North America

(2012) Daniel K. Fabian et al.   MOLECULAR ECOLOGY

The Drosophila melanogaster Genetic Reference Panel

(2012) Trudy F. C. Mackay et al.   NATURE

Clinal variation in the non-acclimated and cold-acclimated freezing tolerance of Arabidopsis thaliana accessions

(2012) ELLEN ZUTHER et al.   PLANT CELL AND ENVIRONMENT

LDx: Estimation of Linkage Disequilibrium from High-Throughput Pooled Resequencing Data

(2012) Alison F. Feder et al.   PLoS One

Population Genomics of Inversion Polymorphisms in Drosophila melanogaster

(2012) Russell B. Corbett-Detig et al.   PLoS Genetics

PoPoolation: A Toolbox for Population Genetic Analysis of Next Generation Sequencing Data from Pooled Individuals

(2011) Robert Kofler et al.   PLoS One

Fast and accurate long-read alignment with Burrows–Wheeler transform

(2010) Heng Li et al.   BIOINFORMATICS

Patterns and Processes of Genome-Wide Divergence Between North American and African Drosophila melanogaster

(2010) Roman Yukilevich et al.   GENETICS

Genomic Differentiation Between Temperate and Tropical Australian Populations of Drosophila melanogaster

(2010) B. Kolaczkowski et al.   GENETICS

The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data

(2010) A. McKenna et al.   GENOME RESEARCH

Identification of a candidate adaptive polymorphism forDrosophilalife history by parallel independent clines on two continents

(2010) ANNALISE B. PAABY et al.   MOLECULAR ECOLOGY

A Coastal Cline in Sodium Accumulation in Arabidopsis thaliana Is Driven by Natural Variation of the Sodium Transporter AtHKT1;1

(2010) Ivan Baxter et al.   PLoS Genetics

Genetic Consequences of Range Expansions

(2009) Laurent Excoffier et al.   Annual Review of Ecology Evolution and Systematics

AFRICAN MORPHOLOGY, BEHAVIOR AND PHERMONES UNDERLIE INCIPIENT SEXUAL ISOLATION BETWEEN US AND CARIBBEANDROSOPHILA MELANOGASTER

(2008) Roman Yukilevich et al.   EVOLUTION

REPRODUCTIVE DIAPAUSE AND LIFE-HISTORY CLINES IN NORTH AMERICAN POPULATIONS OF DROSOPHILA MELANOGASTER

(2008) Paul S. Schmidt et al.   EVOLUTION

Genomic Analysis of Adaptive Differentiation in Drosophila melanogaster

(2008) T. L. Turner et al.   GENETICS

Investigating latitudinal clines for life history and stress resistance traits inDrosophila simulansfrom eastern Australia

(2008) A. L. ARTHUR et al.   JOURNAL OF EVOLUTIONARY BIOLOGY

Adaptations to Climate in Candidate Genes for Common Metabolic Disorders

(2008) Angela M. Hancock et al.   PLoS Genetics