Climate‐specific biosynthetic gene clusters in populations of a lichen‐forming fungus

Benchmarking the performance of Pool‐seq SNP callers using simulated and real sequencing data

(2021) Sara Guirao‐Rico et al.   Molecular Ecology Resources

Contributions of Spore Secondary Metabolites to UV-C Protection and Virulence Vary in Different Aspergillus fumigatus Strains

(2020) Adriana Blachowicz et al.   mBio

What Is in Umbilicaria pustulata? A Metagenomic Approach to Reconstruct the Holo-Genome of a Lichen

(2020) Bastian Greshake Tzovaras et al.   Genome Biology and Evolution

Expanding the mutualistic niche: parallel symbiont turnover along climatic gradients

(2020) Gregor Rolshausen et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Diversity of Secondary Metabolism in Aspergillus nidulans Clinical Isolates

(2020) M. T. Drott et al.   mSphere

Genome-wide analysis of biosynthetic gene cluster reveals correlated gene loss with absence of usnic acid in lichen forming fungi

(2020) David Pizarro et al.   Genome Biology and Evolution

Phytohormone release by three isolated lichen mycobionts and the effects of indole-3-acetic acid on their compatible photobionts

(2020) Gregor Pichler et al.   SYMBIOSIS

Biosynthetic Gene Content of the ‘Perfume Lichens’ Evernia prunastri and Pseudevernia furfuracea

(2019) Anjuli Calchera et al.   MOLECULES

A genome-wide scan shows evidence for local adaptation in a widespread keystone Neotropical forest tree

(2019) Rosane G. Collevatti et al.   HEREDITY

Chromosome rearrangements shape the diversification of secondary metabolism in the cyclosporin producing fungus Tolypocladium inflatum

(2019) Rodrigo A. Olarte et al.   BMC GENOMICS

Variation in secondary metabolite production potential in the Fusarium incarnatum-equiseti species complex revealed by comparative analysis of 13 genomes

(2019) Alessandra Villani et al.   BMC GENOMICS

antiSMASH 5.0: updates to the secondary metabolite genome mining pipeline

(2019) Kai Blin et al.   NUCLEIC ACIDS RESEARCH

The most heat‐resistant conidia observed to date are formed by distinct strains of Paecilomyces variotii

(2019) Tom Brule et al.   ENVIRONMENTAL MICROBIOLOGY

Secondary metabolism in the lichen symbiosis

(2018) Mark J. Calcott et al.   CHEMICAL SOCIETY REVIEWS

The draft genome of the lichen-forming fungus Lasallia hispanica (Frey) Sancho & A. Crespo

(2018) Francesco DAL GRANDE et al.   LICHENOLOGIST

Response of Plant Secondary Metabolites to Environmental Factors

(2018) et al.   MOLECULES

Linking secondary metabolites to gene clusters through genome sequencing of six diverseAspergillusspecies

(2018) Inge Kjærbølling et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Duplication of a Pks gene cluster and subsequent functional diversification facilitate environmental adaptation in Metarhizium species

(2018) Guohong Zeng et al.   PLoS Genetics

Smells from the desert: Microbial volatiles that affect plant growth and development of native and non-native plant species

(2018) David A. Camarena-Pozos et al.   PLANT CELL AND ENVIRONMENT

Environment and host identity structure communities of green algal symbionts in lichens

(2017) Francesco Dal Grande et al.   NEW PHYTOLOGIST

Temperature during conidiation affects stress tolerance, pigmentation, and trypacidin accumulation in the conidia of the airborne pathogen Aspergillus fumigatus

(2017) Daisuke Hagiwara et al.   PLoS One

Hitchhiking and epistasis give rise to cohort dynamics in adapting populations

(2017) Sean W. Buskirk et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Umbilicariaceae (lichenized Ascomycota) – Trait evolution and a new generic concept

(2017) Evgeny A. Davydov et al.   TAXON

Drivers of genetic diversity in secondary metabolic gene clusters within a fungal species

(2017) Abigail L. Lind et al.   PLOS BIOLOGY

Functions of fungal melanin beyond virulence

(2017) Radames J.B. Cordero et al.   Fungal Biology Reviews

Natural product diversity associated with the nematode symbionts Photorhabdus and Xenorhabdus

(2017) Nicholas J. Tobias et al.   Nature Microbiology

Sharing and community curation of mass spectrometry data with Global Natural Products Social Molecular Networking

(2016) Mingxun Wang et al.   NATURE BIOTECHNOLOGY

Fungal-algal association patterns in lichen symbiosis linked to macroclimate

(2016) Garima Singh et al.   NEW PHYTOLOGIST

Variation in Fumonisin and Ochratoxin Production Associated with Differences in Biosynthetic Gene Content in Aspergillus niger and A. welwitschiae Isolates from Multiple Crop and Geographic Origins

(2016) Antonia Susca et al.   Frontiers in Microbiology

SeqKit: A Cross-Platform and Ultrafast Toolkit for FASTA/Q File Manipulation

(2016) Wei Shen et al.   PLoS One

PROVEAN web server: a tool to predict the functional effect of amino acid substitutions and indels

(2015) Yongwook Choi et al.   BIOINFORMATICS

Natural variation in flavonol and anthocyanin metabolism during cold acclimation inArabidopsis thalianaaccessions

(2015) ELISA SCHULZ et al.   PLANT CELL AND ENVIRONMENT

Current Results on Biological Activities of Lichen Secondary Metabolites: a Review

(2015) Katalin Molnár et al.   ZEITSCHRIFT FUR NATURFORSCHUNG SECTION C-A JOURNAL OF BIOSCIENCES

Parmotrema hydrium, a new species of Parmeliaceae in southeastern Brazil

(2014) Michel Navarro Benatti et al.   Acta Botanica Brasilica

Impacts of environmental stress on growth, secondary metabolite biosynthetic gene clusters and metabolite production of xerotolerant/xerophilic fungi

(2014) Angel Medina et al.   CURRENT GENETICS

The role of AtfA and HOG MAPK pathway in stress tolerance in conidia of Aspergillus fumigatus

(2014) Daisuke Hagiwara et al.   FUNGAL GENETICS AND BIOLOGY

Comparative transcriptome analysis of the lichen-forming fungus Endocarpon pusillum elucidates its drought adaptation mechanisms

(2014) YanYan Wang et al.   Science China-Life Sciences

Synthesis and Biological Properties of Novel Brefeldin A Analogues

(2013) Kai Seehafer et al.   JOURNAL OF MEDICINAL CHEMISTRY

Seasonal and spatial variation in carbon based secondary compounds in green algal and cyanobacterial members of the epiphytic lichen genus Lobaria

(2013) Yngvar Gauslaa et al.   PHYTOCHEMISTRY

SNP calling by sequencing pooled samples

(2012) Emanuele Raineri et al.   BMC BIOINFORMATICS

Photobiont selectivity and specificity in Caloplaca species in a fog-induced community in the Atacama Desert, northern Chile

(2012) Reinaldo Vargas Castillo et al.   Fungal Biology

Genome mining reveals the evolutionary origin and biosynthetic potential of basidiomycete polyketide synthases

(2012) Gerald Lackner et al.   FUNGAL GENETICS AND BIOLOGY

Flavonoids: biosynthesis, biological functions, and biotechnological applications

(2012) María L. Falcone Ferreyra et al.   Frontiers in Plant Science

Easyfig: a genome comparison visualizer

(2011) M. J. Sullivan et al.   BIOINFORMATICS

PoPoolation2: identifying differentiation between populations using sequencing of pooled DNA samples (Pool-Seq)

(2011) R. Kofler et al.   BIOINFORMATICS

The allergenicity of Aspergillus fumigatus conidia is influenced by growth temperature

(2011) Swee Yang Low et al.   Fungal Biology

Insights from the first putative biosynthetic gene cluster for a lichen depside and depsidone

(2011) Daniele Armaleo et al.   MYCOLOGIA

antiSMASH: rapid identification, annotation and analysis of secondary metabolite biosynthesis gene clusters in bacterial and fungal genome sequences

(2011) Marnix H. Medema et al.   NUCLEIC ACIDS RESEARCH

PoPoolation: A Toolbox for Population Genetic Analysis of Next Generation Sequencing Data from Pooled Individuals

(2011) Robert Kofler et al.   PLoS One

Possible functional roles of cortical depsides and medullary depsidones in the foliose lichen Hypogymnia physodes

(2008) Knut Asbjørn Solhaug et al.   FLORA

Thin layer chromatography analysis of antioxidant constituents of lichens from Antarctica

(2008) Hari Datta Bhattarai et al.   Journal of Natural Medicines

The Population Genetics of dN/dS

(2008) Sergey Kryazhimskiy et al.   PLoS Genetics