The draft genome of the lichen-forming fungus Lasallia hispanica (Frey) Sancho & A. Crespo

Characterization of the mating-type locus (MAT) reveals a heterothallic mating system in Knightiella splachnirima

(2017) Lars R. LUDWIG et al.   LICHENOLOGIST

F v/F m acclimation to the Mediterranean summer drought in two sympatric Lasallia species from the Iberian mountains

(2017) M. VIVAS et al.   LICHENOLOGIST

Conserved genomic collinearity as a source of broadly applicable, fast evolving, markers to resolve species complexes: A case study using the lichen-forming genus Peltigera section Polydactylon

(2017) Nicolas Magain et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Environment and host identity structure communities of green algal symbionts in lichens

(2017) Francesco Dal Grande et al.   NEW PHYTOLOGIST

Sequencing genomes from mixed DNA samples - evaluating the metagenome skimming approach in lichenized fungi

(2017) Anjuli Meiser et al.   Scientific Reports

Panmixia and dispersal from the Mediterranean Basin to Macaronesian Islands of a macrolichen species

(2017) David Alors et al.   Scientific Reports

Reference-based RADseq resolves robust relationships among closely related species of lichen-forming fungi using metagenomic DNA

(2017) Felix Grewe et al.   Scientific Reports

Fungal and cyanobacterial gene expression in a lichen symbiosis: Effect of temperature and location

(2016) Sophie S. Steinhäuser et al.   Fungal Biology

Identification of 6-Hydroxymellein Synthase and Accessory Genes in the Lichen Cladonia uncialis

(2016) Mona Abdel-Hameed et al.   JOURNAL OF NATURAL PRODUCTS

New features of desiccation tolerance in the lichen photobiont Trebouxia gelatinosa are revealed by a transcriptomic approach

(2016) Fabio Candotto Carniel et al.   PLANT MOLECULAR BIOLOGY

Resolving evolutionary relationships in lichen-forming fungi using diverse phylogenomic datasets and analytical approaches

(2016) Steven D. Leavitt et al.   Scientific Reports

NxTrim: optimized trimming of Illumina mate pair reads: Table 1.

(2015) Jared O’Connell et al.   BIOINFORMATICS

BUSCO: assessing genome assembly and annotation completeness with single-copy orthologs

(2015) Felipe A. Simão et al.   BIOINFORMATICS

Potential and pitfalls of eukaryotic metagenome skimming: a test case for lichens

(2015) Bastian Greshake et al.   Molecular Ecology Resources

Trimmomatic: a flexible trimmer for Illumina sequence data

(2014) Anthony M. Bolger et al.   BIOINFORMATICS

Compositions of fungal secretomes indicate a greater impact of phylogenetic history than lifestyle adaptation

(2014) Jorrit-Jan Krijger et al.   BMC GENOMICS

Genome characteristics reveal the impact of lichenization on lichen-forming fungus Endocarpon pusillum Hedwig (Verrucariales, Ascomycota)

(2014) Yan-Yan Wang et al.   BMC GENOMICS

A roadmap for natural product discovery based on large-scale genomics and metabolomics

(2014) James R Doroghazi et al.   Nature Chemical Biology

PASTEC: An Automatic Transposable Element Classification Tool

(2014) Claire Hoede et al.   PLoS One

PEAR: a fast and accurate Illumina Paired-End reAd mergeR

(2013) J. Zhang et al.   BIOINFORMATICS

Next-generation phylogenomics

(2013) Cheong Xin Chan et al.   Biology Direct

Transposable elements and microevolutionary changes in natural populations

(2013) Georgi Bonchev et al.   Molecular Ecology Resources

Metagenomic natural product discovery in lichen provides evidence for a family of biosynthetic pathways in diverse symbioses

(2013) A. Kampa et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Mitochondrial genomes from the lichenized fungi Peltigera membranacea and Peltigera malacea: Features and phylogeny

(2012) Basil Britto Xavier et al.   Fungal Biology

SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing

(2012) Anton Bankevich et al.   JOURNAL OF COMPUTATIONAL BIOLOGY

Genetic Basis of Self-Incompatibility in the Lichen-Forming Fungus Lobaria pulmonaria and Skewed Frequency Distribution of Mating-Type Idiomorphs: Implications for Conservation

(2012) Garima Singh et al.   PLoS One

Toward almost closed genomes with GapFiller

(2012) Marten Boetzer et al.   GENOME BIOLOGY

SignalP 4.0: discriminating signal peptides from transmembrane regions

(2011) Thomas Nordahl Petersen et al.   NATURE METHODS

SyMAP v3.4: a turnkey synteny system with application to plant genomes

(2011) Carol Soderlund et al.   NUCLEIC ACIDS RESEARCH

Considering Transposable Element Diversification in De Novo Annotation Approaches

(2011) Timothée Flutre et al.   PLoS One

Scaffolding pre-assembled contigs using SSPACE

(2010) Marten Boetzer et al.   BIOINFORMATICS

BLAST+: architecture and applications

(2009) Christiam Camacho et al.   BMC BIOINFORMATICS

The systematic position of Lasallia caroliniana (Tuck.) Davydov, Peršoh & Rambold comb. nova and considerations on the generic concept of Lasallia (Umbilicariaceae, Ascomycota)

(2009) Evgeny A. Davydov et al.   MYCOLOGICAL PROGRESS