Crowdsourcing in biomedicine: challenges and opportunities

Community challenges in biomedical text mining over 10 years: success, failure and the future

(2015) Chung-Chi Huang et al.   BRIEFINGS IN BIOINFORMATICS

Scaling drug indication curation through crowdsourcing

(2015) Ritu Khare et al.   Database-The Journal of Biological Databases and Curation

Stereoselective virtual screening of the ZINC database using atom pair 3D-fingerprints

(2015) Mahendra Awale et al.   Journal of Cheminformatics

Using Google Flu Trends data in forecasting influenza-like–illness related ED visits in Omaha, Nebraska

(2014) Ozgur M. Araz et al.   AMERICAN JOURNAL OF EMERGENCY MEDICINE

Digital Drug Safety Surveillance: Monitoring Pharmaceutical Products in Twitter

(2014) Clark C. Freifeld et al.   DRUG SAFETY

Immune Attack players perform better on a test of cellular immunology and self confidence than their classmates who play a control video game

(2014) Melanie Stegman   FARADAY DISCUSSIONS

LabeledIn: Cataloging labeled indications for human drugs

(2014) Ritu Khare et al.   JOURNAL OF BIOMEDICAL INFORMATICS

NCBI disease corpus: A resource for disease name recognition and concept normalization

(2014) Rezarta Islamaj Doğan et al.   JOURNAL OF BIOMEDICAL INFORMATICS

The use of crowdsourcing for dietary self-monitoring: crowdsourced ratings of food pictures are comparable to ratings by trained observers

(2014) G. M. Turner-McGrievy et al.   JOURNAL OF THE AMERICAN MEDICAL INFORMATICS ASSOCIATION

Using the wisdom of the crowds to find critical errors in biomedical ontologies: a study of SNOMED CT

(2014) Jonathan M Mortensen et al.   JOURNAL OF THE AMERICAN MEDICAL INFORMATICS ASSOCIATION

Use of Crowdsourcing for Cancer Clinical Trial Development

(2014) Amanda Leiter et al.   JNCI-Journal of the National Cancer Institute

Crowdsourcing for Cognitive Science – The Utility of Smartphones

(2014) Harriet R. Brown et al.   PLoS One

Using Crowdsourcing to Evaluate Published Scientific Literature: Methods and Example

(2014) Andrew W. Brown et al.   PLoS One

Gamification as a tool for enhancing graduate medical education

(2014) Christa R Nevin et al.   POSTGRADUATE MEDICAL JOURNAL

RNA design rules from a massive open laboratory

(2014) Jeehyung Lee et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

WeFold: A coopetition for protein structure prediction

(2014) George A. Khoury et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

Seasonal trends in sleep-disordered breathing: evidence from Internet search engine query data

(2014) David G. Ingram et al.   Sleep and Breathing

Scientific rigor through videogames

(2014) Adrien Treuille et al.   TRENDS IN BIOCHEMICAL SCIENCES

BioCreative-IV virtual issue

(2014) C. N. Arighi et al.   Database-The Journal of Biological Databases and Curation

Hybrid curation of gene–mutation relations combining automated extraction and crowdsourcing

(2014) John D. Burger et al.   Database-The Journal of Biological Databases and Curation

BC4GO: a full-text corpus for the BioCreative IV GO task

(2014) K. Van Auken et al.   Database-The Journal of Biological Databases and Curation

Innovating Openly: Researchers and Patients Turn to Crowdsourcing to Collaborate on Clinical Trials, Drug Discovery, and More

(2014) Carol Cruzan Morton   IEEE Pulse

Quantifying the Impact and Extent of Undocumented Biomedical Synonymy

(2014) David R. Blair et al.   PLoS Computational Biology

A Crowdsourcing Model for Creating Preclinical Medical Education Study Tools

(2013) Hansen C. Bow et al.   ACADEMIC MEDICINE

Crowdsourcing for bioinformatics

(2013) B. M. Good et al.   BIOINFORMATICS

DNorm: disease name normalization with pairwise learning to rank

(2013) R. Leaman et al.   BIOINFORMATICS

Web 2.0-Based Crowdsourcing for High-Quality Gold Standard Development in Clinical Natural Language Processing

(2013) Haijun Zhai et al.   JOURNAL OF MEDICAL INTERNET RESEARCH

Formative evaluation of the accuracy of a clinical decision support system for cervical cancer screening

(2013) Kavishwar Balwant Wagholikar et al.   JOURNAL OF THE AMERICAN MEDICAL INFORMATICS ASSOCIATION

Identifying medical terms in patient-authored text: a crowdsourcing-based approach

(2013) Diana Lynn MacLean et al.   JOURNAL OF THE AMERICAN MEDICAL INFORMATICS ASSOCIATION

Web-scale pharmacovigilance: listening to signals from the crowd

(2013) Ryen W White et al.   JOURNAL OF THE AMERICAN MEDICAL INFORMATICS ASSOCIATION

When Google got flu wrong

(2013) Declan Butler   NATURE

Prize-based contests can provide solutions to computational biology problems

(2013) Karim R Lakhani et al.   NATURE BIOTECHNOLOGY

PubTator: a web-based text mining tool for assisting biocuration

(2013) Chih-Hsuan Wei et al.   NUCLEIC ACIDS RESEARCH

Large-Scale Event Extraction from Literature with Multi-Level Gene Normalization

(2013) Sofie Van Landeghem et al.   PLoS One

Dizeez: An Online Game for Human Gene-Disease Annotation

(2013) Salvatore Loguercio et al.   PLoS One

Systematic Analysis of Challenge-Driven Improvements in Molecular Prognostic Models for Breast Cancer

(2013) A. A. Margolin et al.   Science Translational Medicine

An overview of the BioCreative 2012 Workshop Track III: interactive text mining task

(2013) C. N. Arighi et al.   Database-The Journal of Biological Databases and Curation

Towards an integrated crowdsourcing definition

(2012) Enrique Estellés-Arolas et al.   JOURNAL OF INFORMATION SCIENCE

Development and evaluation of a crowdsourcing methodology for knowledge base construction: identifying relationships between clinical problems and medications

(2012) Allison B McCoy et al.   JOURNAL OF THE AMERICAN MEDICAL INFORMATICS ASSOCIATION

Wisdom of crowds for robust gene network inference

(2012) Daniel Marbach et al.   NATURE METHODS

Phylo: A Citizen Science Approach for Improving Multiple Sequence Alignment

(2012) Alexander Kawrykow et al.   PLoS One

SR4GN: A Species Recognition Software Tool for Gene Normalization

(2012) Chih-Hsuan Wei et al.   PLoS One

Data-Driven Prediction of Drug Effects and Interactions

(2012) N. P. Tatonetti et al.   Science Translational Medicine

Biocuration workflows and text mining: overview of the BioCreative 2012 Workshop Track II

(2012) Z. Lu et al.   Database-The Journal of Biological Databases and Curation

BioCreative-2012 Virtual Issue

(2012) C. H. Wu et al.   Database-The Journal of Biological Databases and Curation

Accelerating literature curation with text-mining tools: a case study of using PubTator to curate genes in PubMed abstracts

(2012) C.-H. Wei et al.   Database-The Journal of Biological Databases and Curation

The G protein-coupled receptors in the pufferfish Takifugu rubripes

(2011) Anita Sarkar et al.   BMC BIOINFORMATICS

Evolution of orthologous tandemly arrayed gene clusters

(2011) Olivier Tremblay Savard et al.   BMC BIOINFORMATICS

Mining the Gene Wiki for functional genomic knowledge

(2011) Benjamin M Good et al.   BMC GENOMICS

Amazon Mechanical Turk: Gold Mine or Coal Mine?

(2011) Karën Fort et al.   COMPUTATIONAL LINGUISTICS

Recommending MeSH terms for annotating biomedical articles

(2011) Minlie Huang et al.   JOURNAL OF THE AMERICAN MEDICAL INFORMATICS ASSOCIATION

2010 i2b2/VA challenge on concepts, assertions, and relations in clinical text

(2011) Özlem Uzuner et al.   JOURNAL OF THE AMERICAN MEDICAL INFORMATICS ASSOCIATION

Crystal structure of a monomeric retroviral protease solved by protein folding game players

(2011) Firas Khatib et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

Making your database available through Wikipedia: the pros and cons

(2011) R. D. Finn et al.   NUCLEIC ACIDS RESEARCH

Games with a scientific purpose

(2011) Benjamin M Good et al.   GENOME BIOLOGY

Toward an automatic method for extracting cancer- and other disease-related point mutations from the biomedical literature

(2010) Emily Doughty et al.   BIOINFORMATICS

Semi-automatic semantic annotation of PubMed queries: A study on quality, efficiency, satisfaction

(2010) Aurélie Névéol et al.   JOURNAL OF BIOMEDICAL INFORMATICS

Design, engineering and utility of biotic games

(2010) Ingmar H. Riedel-Kruse et al.   LAB ON A CHIP

Predicting protein structures with a multiplayer online game

(2010) Seth Cooper et al.   NATURE

Understanding PubMed(R) user search behavior through log analysis

(2009) R. Islamaj Dogan et al.   Database-The Journal of Biological Databases and Curation

TREC genomics special issue overview

(2008) William Hersh et al.   Information Retrieval Journal

Evaluation of query expansion using MeSH in PubMed

(2008) Zhiyong Lu et al.   Information Retrieval Journal

Evaluating Relevance Ranking Strategies for MEDLINE Retrieval

(2008) Z. Lu et al.   JOURNAL OF THE AMERICAN MEDICAL INFORMATICS ASSOCIATION