Large-Scale Event Extraction from Literature with Multi-Level Gene Normalization

The Genia Event and Protein Coreference tasks of the BioNLP Shared Task 2011

(2013) Jin-Dong Kim et al.   BMC BIOINFORMATICS

BioContext: an integrated text mining system for large-scale extraction and contextualization of biomolecular events

(2012) M. Gerner et al.   BIOINFORMATICS

Boosting automatic event extraction from the literature using domain adaptation and coreference resolution

(2012) M. Miwa et al.   BIOINFORMATICS

University of Turku in the BioNLP'11 Shared Task

(2012) Jari Björne et al.   BMC BIOINFORMATICS

Concept annotation in the CRAFT corpus

(2012) Michael Bada et al.   BMC BIOINFORMATICS

Overview of the ID, EPI and REL tasks of BioNLP Shared Task 2011

(2012) Sampo Pyysalo et al.   BMC BIOINFORMATICS

SR4GN: A Species Recognition Software Tool for Gene Normalization

(2012) Chih-Hsuan Wei et al.   PLoS One

BioN∅T: A searchable database of biomedical negated sentences

(2011) Shashank Agarwal et al.   BMC BIOINFORMATICS

Cross-species gene normalization by species inference

(2011) Chih-Hsuan Wei et al.   BMC BIOINFORMATICS

EXTRACTING BIO-MOLECULAR EVENTS FROM LITERATURE-THE BIONLP’09 SHARED TASK

(2011) Jin-Dong Kim et al.   COMPUTATIONAL INTELLIGENCE

Predictive networks: a flexible, open source, web application for integration and analysis of human gene networks

(2011) Benjamin Haibe-Kains et al.   NUCLEIC ACIDS RESEARCH

Interactive Tree Of Life v2: online annotation and display of phylogenetic trees made easy

(2011) I. Letunic et al.   NUCLEIC ACIDS RESEARCH

Database resources of the National Center for Biotechnology Information

(2011) E. W. Sayers et al.   NUCLEIC ACIDS RESEARCH

Medie and Info-pubmed: 2010 update

(2010) Tomoko Ohta et al.   BMC BIOINFORMATICS

The structural and content aspects of abstracts versus bodies of full text journal articles are different

(2010) K Bretonnel Cohen et al.   BMC BIOINFORMATICS

An Overview of BioCreative II.5

(2010) F Leitner et al.   IEEE-ACM Transactions on Computational Biology and Bioinformatics

The BioPAX community standard for pathway data sharing

(2010) Emek Demir et al.   NATURE BIOTECHNOLOGY

Ensembl 2011

(2010) P. Flicek et al.   NUCLEIC ACIDS RESEARCH

The BioGRID Interaction Database: 2011 update

(2010) C. Stark et al.   NUCLEIC ACIDS RESEARCH

Ongoing and future developments at the Universal Protein Resource

(2010)   NUCLEIC ACIDS RESEARCH

The STRING database in 2011: functional interaction networks of proteins, globally integrated and scored

(2010) D. Szklarczyk et al.   NUCLEIC ACIDS RESEARCH

The RCSB Protein Data Bank: redesigned web site and web services

(2010) P. W. Rose et al.   NUCLEIC ACIDS RESEARCH

Event extraction for systems biology by text mining the literature

(2010) Sophia Ananiadou et al.   TRENDS IN BIOTECHNOLOGY

Beyond genes, proteins, and abstracts: Identifying scientific claims from full-text biomedical articles

(2009) Catherine Blake   JOURNAL OF BIOMEDICAL INFORMATICS

Ensembl Genomes: Extending Ensembl across the taxonomic space

(2009) P. J. Kersey et al.   NUCLEIC ACIDS RESEARCH

Integrating high dimensional bi-directional parsing models for gene mention tagging

(2008) C.-N. Hsu et al.   BIOINFORMATICS

Evaluation of text-mining systems for biology: overview of the Second BioCreative community challenge

(2008) Martin Krallinger et al.   GENOME BIOLOGY