Distinct lineages and population genomic structure of the coral Pachyseris speciosa in the small equatorial reef system of Singapore

Morphological stasis masks ecologically divergent coral species on tropical reefs

(2021) Pim Bongaerts et al.   CURRENT BIOLOGY

Barriers and corridors of gene flow in an urbanized tropical reef system

(2021) Lutfi Afiq‐Rosli et al.   Evolutionary Applications

Towards a rigorous species delimitation framework for scleractinian corals based on RAD sequencing: the case study of Leptastrea from the Indo-Pacific

(2020) Roberto Arrigoni et al.   CORAL REEFS

Low Symbiodiniaceae diversity in a turbid marginal reef environment

(2020) E. G. Smith et al.   CORAL REEFS

Homogenization of Endosymbiont Communities Hosted by Equatorial Corals during the 2016 Mass Bleaching Event

(2020) Sudhanshi S. Jain et al.   Microorganisms

Light limitation selects for depth generalists in urbanised reef coral communities

(2019) Gwendolyn S.E. Chow et al.   MARINE ENVIRONMENTAL RESEARCH

Populations of the coral species Montastraea cavernosa on the Belize Barrier Reef lack vertical connectivity

(2019) Ryan J. Eckert et al.   Scientific Reports

ResDisMapper : An r package for fine‐scale mapping of resistance to dispersal

(2019) Qian Tang et al.   Molecular Ecology Resources

Uncovering hidden coral diversity: a new cryptic lobophylliid scleractinian from the Indian Ocean

(2018) Roberto Arrigoni et al.   CLADISTICS

Accurate population genetic measurements require cryptic species identification in corals

(2018) Elizabeth A. Sheets et al.   CORAL REEFS

Comparing patterns of taxonomic, functional and phylogenetic diversity in reef coral communities

(2018) Joy S. Y. Wong et al.   CORAL REEFS

Human activities and landscape features interact to closely define the distribution and dispersal of an urban commensal

(2018) Qian Tang et al.   Evolutionary Applications

Genetic signatures through space, time and multiple disturbances in a ubiquitous brooding coral

(2018) Jim N. Underwood et al.   MOLECULAR ECOLOGY

Cryptic species as a window into the paradigm shift of the species concept

(2018) Cene Fišer et al.   MOLECULAR ECOLOGY

The K = 2 conundrum

(2017) Jasmine K. Janes et al.   MOLECULAR ECOLOGY

Reevaluating species number, distribution and endemism of the coral genus Pocillopora Lamarck, 1816 using species delimitation methods and microsatellites

(2017) P. Gélin et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Deep reefs are not universal refuges: Reseeding potential varies among coral species

(2017) Pim Bongaerts et al.   Science Advances

Cryptic genetic divergence within threatened species of Acropora coral from the Indian and Pacific Oceans

(2016) Zoe T. Richards et al.   CONSERVATION GENETICS

Long distance dispersal and vertical gene flow in the Caribbean brooding coral Porites astreoides

(2016) Xaymara M. Serrano et al.   Scientific Reports

The urban marine environment of Singapore

(2016) Tsai Min Sin et al.   Regional Studies in Marine Science

27 years of benthic and coral community dynamics on turbid, highly urbanised reefs off Singapore

(2016) J. R. Guest et al.   Scientific Reports

Switch between Morphospecies of Pocillopora Corals

(2015) David A. Paz-García et al.   AMERICAN NATURALIST

Recreating pulsed turbidity events to determine coral–sediment thresholds for active management

(2015) Nicola K. Browne et al.   JOURNAL OF EXPERIMENTAL MARINE BIOLOGY AND ECOLOGY

Unexpected cryptic species diversity in the widespread coralSeriatopora hystrixmasks spatial-genetic patterns of connectivity

(2015) Patricia A. Warner et al.   MOLECULAR ECOLOGY

Clumpak : a program for identifying clustering modes and packaging population structure inferences across K

(2015) Naama M. Kopelman et al.   Molecular Ecology Resources

Coral Settlement on a Highly Disturbed Equatorial Reef System

(2015) Andrew G. Bauman et al.   PLoS One

Short Tree, Long Tree, Right Tree, Wrong Tree: New Acquisition Bias Corrections for Inferring SNP Phylogenies

(2015) Adam D. Leaché et al.   SYSTEMATIC BIOLOGY

From promise to practice: pairing non-invasive sampling with genomics in conservation

(2015) Michael A. Russello et al.   PeerJ

Novel R tools for analysis of genome-wide population genetic data with emphasis on clonality

(2015) Zhian N. Kamvar et al.   Frontiers in Genetics

RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies

(2014) Alexandros Stamatakis   BIOINFORMATICS

Genetic connectivity of the broadcast spawning reef coral Platygyra sinensis on impacted reefs, and the description of new microsatellite markers

(2014) Y. C. Tay et al.   CORAL REEFS

Population structure of the corals Orbicella faveolata and Acropora palmata in the Mesoamerican Barrier Reef System with comparisons over Caribbean basin-wide spatial scale

(2014) I. Porto-Hannes et al.   MARINE BIOLOGY

Photo-physiological costs associated with acute sediment stress events in three near-shore turbid water corals

(2014) NK Browne et al.   MARINE ECOLOGY PROGRESS SERIES

Multilocus evidence for globally distributed cryptic species and distinct populations across ocean gyres in a mesopelagic copepod

(2014) Kimberly R. Andrews et al.   MOLECULAR ECOLOGY

Lobophylliidae (Cnidaria, Scleractinia) reshuffled: Pervasive non-monophyly at genus level

(2014) Roberto Arrigoni et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Forgotten in the taxonomic literature: resurrection of the scleractinian coral genusSclerophyllia(Scleractinia, Lobophylliidae) from the Arabian Peninsula and its phylogenetic relationships

(2014) Roberto Arrigoni et al.   SYSTEMATICS AND BIODIVERSITY

Pachyseris inattesa sp. n. (Cnidaria, Anthozoa, Scleractinia): a new reef coral species from the Red Sea and its phylogenetic relationships

(2014) Tullia Isotta Terraneo et al.   ZooKeys

Towards a phylogenetic classification of reef corals: the Indo-Pacific generaMerulina,GoniastreaandScapophyllia(Scleractinia, Merulinidae)

(2014) Danwei Huang et al.   ZOOLOGICA SCRIPTA

Poppr: an R package for genetic analysis of populations with clonal, partially clonal, and/or sexual reproduction

(2014) Zhian N. Kamvar et al.   PeerJ

Geographic ranges of reef corals (Cnidaria: Anthozoa: Scleractinia) in the Indo-Pacific

(2013) Terry P. Hughes et al.   ECOLOGY

Cryptic polychaete diversity: a review

(2013) Arne Nygren   ZOOLOGICA SCRIPTA

ezRAD: a simplified method for genomic genotyping in non-model organisms

(2013) Robert J. Toonen et al.   PeerJ

An overview of STRUCTURE: applications, parameter settings, and supporting software

(2013) Liliana Porras-Hurtado et al.   Frontiers in Genetics

Assessing hidden species diversity in the coral Pocillopora damicornis from Eastern Australia

(2012) S. Schmidt-Roach et al.   CORAL REEFS

The Magnitude of Global Marine Species Diversity

(2012) Ward Appeltans et al.   CURRENT BIOLOGY

The first modern solitary Agariciidae (Anthozoa, Scleractinia) revealed by molecular and microstructural analysis

(2012) Marcelo V. Kitahara et al.   INVERTEBRATE SYSTEMATICS

Complete mitochondrial genomes and a novel spatial genetic method reveal cryptic phylogeographical structure and migration patterns among brown bears in north-western Eurasia

(2012) Marju Keis et al.   JOURNAL OF BIOGEOGRAPHY

Extensive sympatry, cryptic diversity and introgression throughout the geographic distribution of two coral species complexes

(2012) JASON T. LADNER et al.   MOLECULAR ECOLOGY

What we know and don’t know about Earth's missing biodiversity

(2012) Brett R. Scheffers et al.   TRENDS IN ECOLOGY & EVOLUTION

Deltocyathiidae, an early-diverging family of Robust corals (Anthozoa, Scleractinia)

(2012) Marcelo V. Kitahara et al.   ZOOLOGICA SCRIPTA

PGDSpider: an automated data conversion tool for connecting population genetics and genomics programs

(2011) H. E. L. Lischer et al.   BIOINFORMATICS

Comparison of morphological and genetic analyses reveals cryptic divergence and morphological plasticity in Stylophora (Cnidaria, Scleractinia)

(2011) Fabrizio Stefani et al.   CORAL REEFS

Evidence of hidden biodiversity, ongoing speciation and diverse patterns of genetic structure in giant Antarctic amphipods

(2011) HELENA P. BAIRD et al.   MOLECULAR ECOLOGY

Predicting Total Global Species Richness Using Rates of Species Description and Estimates of Taxonomic Effort

(2011) Mark J. Costello et al.   SYSTEMATIC BIOLOGY

How Many Species Are There on Earth and in the Ocean?

(2011) Camilo Mora et al.   PLOS BIOLOGY

Discriminant analysis of principal components: a new method for the analysis of genetically structured populations

(2010) Thibaut Jombart et al.   BMC GENETICS

Genetic Divergence across Habitats in the Widespread Coral Seriatopora hystrix and Its Associated Symbiodinium

(2010) Pim Bongaerts et al.   PLoS One

A Comprehensive Phylogenetic Analysis of the Scleractinia (Cnidaria, Anthozoa) Based on Mitochondrial CO1 Sequence Data

(2010) Marcelo V. Kitahara et al.   PLoS One

Correlated evolution of sex and reproductive mode in corals (Anthozoa: Scleractinia)

(2010) A. M. Kerr et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

Hidden genetic diversity in a key model species of coral

(2009) Petra Souter   MARINE BIOLOGY

Morphological plasticity in scleractinian corals

(2008) Peter A. Todd   BIOLOGICAL REVIEWS

A Genome-Scan Method to Identify Selected Loci Appropriate for Both Dominant and Codominant Markers: A Bayesian Perspective

(2008) M. Foll et al.   GENETICS

More evidence for pervasive paraphyly in scleractinian corals: Systematic study of Southeast Asian Faviidae (Cnidaria; Scleractinia) based on molecular and morphological data

(2008) Danwei Huang et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Mitochondrial and Nuclear Genes Suggest that Stony Corals Are Monophyletic but Most Families of Stony Corals Are Not (Order Scleractinia, Class Anthozoa, Phylum Cnidaria)

(2008) Hironobu Fukami et al.   PLoS One

When to stop managing or surveying cryptic threatened species

(2008) I. Chades et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA