Effect of LSU and ITS genetic markers and reference databases on analyses of fungal communities

Comparative productivity of alternative cellulosic bioenergy cropping systems in the North Central USA

(2016) Gregg R. Sanford et al.   AGRICULTURE ECOSYSTEMS & ENVIRONMENT

Fungal identification using a Bayesian classifier and the Warcup training set of internal transcribed spacer sequences

(2016) Vinita Deshpande et al.   MYCOLOGIA

Comparison of Fungal Community in Black Pepper-Vanilla and Vanilla Monoculture Systems Associated with Vanilla Fusarium Wilt Disease

(2016) Wu Xiong et al.   Frontiers in Microbiology

Size Matters: Assessing Optimum Soil Sample Size for Fungal and Bacterial Community Structure Analyses Using High Throughput Sequencing of rRNA Gene Amplicons

(2016) C. Ryan Penton et al.   Frontiers in Microbiology

New Primers for Discovering Fungal Diversity Using Nuclear Large Ribosomal DNA

(2016) Asma Asemaninejad et al.   PLoS One

Influence of corn, switchgrass, and prairie cropping systems on soil microbial communities in the upper Midwest of the United States

(2015) Ederson da C. Jesus et al.   Global Change Biology Bioenergy

Shotgun metagenomes and multiple primer pair-barcode combinations of amplicons reveal biases in metabarcoding analyses of fungi

(2015) Leho Tedersoo et al.   MycoKeys

From Genus to Phylum: Large-Subunit and Internal Transcribed Spacer rRNA Operon Regions Show Similar Classification Accuracies Influenced by Database Composition

(2013) Andrea Porras-Alfaro et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Fungal Diversity in Permafrost and Tallgrass Prairie Soils under Experimental Warming Conditions

(2013) C. Ryan Penton et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Towards a unified paradigm for sequence-based identification of fungi

(2013) Urmas Kõljalg et al.   MOLECULAR ECOLOGY

Soil microbial communities under model biofuel cropping systems in southern Wisconsin, USA: Impact of crop species and soil properties

(2012) Chao Liang et al.   APPLIED SOIL ECOLOGY

Occurrence and impact of the root-rot biocontrol agent Phlebiopsis gigantea on soil fungal communities in Picea abies forests of northern Europe

(2012) Audrius Menkis et al.   FEMS MICROBIOLOGY ECOLOGY

Fungal community on decomposing leaf litter undergoes rapid successional changes

(2012) Jana Voříšková et al.   ISME Journal

Accurate, Rapid Taxonomic Classification of Fungal Large-Subunit rRNA Genes

(2011) Kuan-Liang Liu et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Bacterial community comparisons by taxonomy-supervised analysis independent of sequence alignment and clustering

(2011) W. J. Sul et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Soil fungal community structure along a soil health gradient in pea fields examined using deep amplicon sequencing

(2011) Lihui Xu et al.   SOIL BIOLOGY & BIOCHEMISTRY

Bacterial Communities in the Rhizosphere of Biofuel Crops Grown on Marginal Lands as Evaluated by 16S rRNA Gene Pyrosequences

(2010) Ederson da C. Jesus et al.   BioEnergy Research

Search and clustering orders of magnitude faster than BLAST

(2010) Robert C. Edgar   BIOINFORMATICS

Molecular phylogeny of Phoma and allied anamorph genera: Towards a reclassification of the Phoma complex

(2009) Johannes de Gruyter et al.