Microbial assembly and association network in watermelon rhizosphere after soil fumigation for Fusarium wilt control

Protist communities are more sensitive to nitrogen fertilization than other microorganisms in diverse agricultural soils

(2019) Zhi-Bo Zhao et al.   Microbiome

Temporal dynamics of soil bacterial communities and multifunctionality are more sensitive to introduced plants than to microbial additions in a multicontaminated soil

(2019) Shuo Jiao et al.   LAND DEGRADATION & DEVELOPMENT

Highly connected taxa located in the microbial network are prevalent in the rhizosphere soil of healthy plant

(2019) Xinqi Huang et al.   BIOLOGY AND FERTILITY OF SOILS

Biochemical pathways used by microorganisms to produce nitrous oxide emissions from soils fumigated with dimethyl disulfide or allyl isothiocyanate

(2019) Wensheng Fang et al.   SOIL BIOLOGY & BIOCHEMISTRY

Pathogen-induced activation of disease-suppressive functions in the endophytic root microbiome

(2019) Víctor J. Carrión et al.   SCIENCE

The Soil-Borne Legacy

(2018) Peter A.H.M. Bakker et al.   CELL

Keystone taxa as drivers of microbiome structure and functioning

(2018) Samiran Banerjee et al.   NATURE REVIEWS MICROBIOLOGY

Ralstonia solanacearum pathogen disrupts bacterial rhizosphere microbiome during an invasion

(2018) Zhong Wei et al.   SOIL BIOLOGY & BIOCHEMISTRY

New insights into the role of microbial community composition in driving soil respiration rates

(2018) Yu-Rong Liu et al.   SOIL BIOLOGY & BIOCHEMISTRY

Dynamic root exudate chemistry and microbial substrate preferences drive patterns in rhizosphere microbial community assembly

(2018) Kateryna Zhalnina et al.   Nature Microbiology

Soil pre-fumigation could effectively improve the disease suppressiveness of biofertilizer to banana Fusarium wilt disease by reshaping the soil microbiome

(2018) Zongzhuan Shen et al.   BIOLOGY AND FERTILITY OF SOILS

CONTINUOUS-CROPPING TOBACCO CAUSED VARIANCE OF CHEMICAL PROPERTIES AND STRUCTURE OF BACTERIAL NETWORK IN SOILS

(2018) Shu Chen et al.   LAND DEGRADATION & DEVELOPMENT

Resilience of the resident soil microbiome to organic and inorganic amendment disturbances and to temporary bacterial invasion

(2018) Késia Silva Lourenço et al.   Microbiome

Deciphering differences in the chemical and microbial characteristics of healthy and Fusarium wilt-infected watermelon rhizosphere soils

(2018) Tianzhu Meng et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Microbial Interkingdom Interactions in Roots Promote Arabidopsis Survival

(2018) Paloma Durán et al.   CELL

Responses of Nitrogen-Cycling Microorganisms to Dazomet Fumigation

(2018) Wensheng Fang et al.   Frontiers in Microbiology

Plant Community Richness Mediates Inhibitory Interactions and Resource Competition between Streptomyces and Fusarium Populations in the Rhizosphere

(2017) Adil Essarioui et al.   MICROBIAL ECOLOGY

Leaf bacterial diversity mediates plant diversity and ecosystem function relationships

(2017) Isabelle Laforest-Lapointe et al.   NATURE

Trends in soil microbial communities during secondary succession

(2017) Zhenghu Zhou et al.   SOIL BIOLOGY & BIOCHEMISTRY

Distinct roles for soil fungal and bacterial communities associated with the suppression of vanilla Fusarium wilt disease

(2017) Wu Xiong et al.   SOIL BIOLOGY & BIOCHEMISTRY

Novel soil fumigation method for suppressing cucumber Fusarium wilt disease associated with soil microflora alterations

(2016) Rong Li et al.   APPLIED SOIL ECOLOGY

MEGA7: Molecular Evolutionary Genetics Analysis Version 7.0 for Bigger Datasets

(2016) Sudhir Kumar et al.   MOLECULAR BIOLOGY AND EVOLUTION

Network analysis reveals functional redundancy and keystone taxa amongst bacterial and fungal communities during organic matter decomposition in an arable soil

(2016) Samiran Banerjee et al.   SOIL BIOLOGY & BIOCHEMISTRY

A New Perspective on Microbes Formerly Known as Nitrite-Oxidizing Bacteria

(2016) Holger Daims et al.   TRENDS IN MICROBIOLOGY

Survival trade-offs in plant roots during colonization by closely related beneficial and pathogenic fungi

(2016) Stéphane Hacquard et al.   Nature Communications

Control of Rhizoctonia solani damping-off disease after soil amendment with dry tissues of Brassica results from increase in Actinomycetes population

(2015) Luis Carlos Ascencion et al.   BIOLOGICAL CONTROL

Microbial and biochemical basis of a Fusarium wilt-suppressive soil

(2015) Jae-Yul Cha et al.   ISME Journal

Fungal invasion of the rhizosphere microbiome

(2015) Emilie Chapelle et al.   ISME Journal

Soils naturally suppressive to banana Fusarium wilt disease harbor unique bacterial communities

(2015) Zongzhuan Shen et al.   PLANT AND SOIL

STAMP: statistical analysis of taxonomic and functional profiles

(2014) Donovan H. Parks et al.   BIOINFORMATICS

Temporal changes in SOM, N, P, K, and their stoichiometric ratios during reforestation in China and interactions with soil depths: Importance of deep-layer soil and management implications

(2014) Wenjie Wang et al.   FOREST ECOLOGY AND MANAGEMENT

Distinct soil microbial diversity under long-term organic and conventional farming

(2014) Martin Hartmann et al.   ISME Journal

FusariumPathogenomics

(2013) Li-Jun Ma et al.   Annual Review of Microbiology

Contrasting primary successional trajectories of fungi and bacteria in retreating glacier soils

(2013) Shawn P. Brown et al.   MOLECULAR ECOLOGY

Going back to the roots: the microbial ecology of the rhizosphere

(2013) Laurent Philippot et al.   NATURE REVIEWS MICROBIOLOGY

Root exudates: the hidden part of plant defense

(2013) Ulrike Baetz et al.   TRENDS IN PLANT SCIENCE

New primers to amplify the fungal ITS2 region - evaluation by 454-sequencing of artificial and natural communities

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Microbial interactions: from networks to models

(2012) Karoline Faust et al.   NATURE REVIEWS MICROBIOLOGY

The rhizosphere microbiome and plant health

(2012) Roeland L. Berendsen et al.   TRENDS IN PLANT SCIENCE

Microbial Co-occurrence Relationships in the Human Microbiome

(2012) Karoline Faust et al.   PLoS Computational Biology

Using network analysis to explore co-occurrence patterns in soil microbial communities

(2011) Albert Barberán et al.   ISME Journal

Deciphering the Rhizosphere Microbiome for Disease-Suppressive Bacteria

(2011) R. Mendes et al.   SCIENCE

Search and clustering orders of magnitude faster than BLAST

(2010) Robert C. Edgar   BIOINFORMATICS

QIIME allows analysis of high-throughput community sequencing data

(2010) J Gregory Caporaso et al.   NATURE METHODS

Exogenous glucosinolate produced by Arabidopsis thaliana has an impact on microbes in the rhizosphere and plant roots

(2009) Mélanie Bressan et al.   ISME Journal

Plant host habitat and root exudates shape soil bacterial community structure

(2008) Feth el Zahar Haichar et al.   ISME Journal