The Effect of Antimicrobial Treatment upon the Gill Bacteriome of Atlantic Salmon (Salmo salar L.) and Progression of Amoebic Gill Disease (AGD) In Vivo

Bacteriomic Profiling of Branchial Lesions Induced by Neoparamoeba perurans Challenge Reveals Commensal Dysbiosis and an Association with Tenacibaculum dicentrarchi in AGD-Affected Atlantic Salmon (Salmo salar L.)

(2020) Joel Slinger et al.   Microorganisms

Microbiome Profiling Reveals a Microbial Dysbiosis During a Natural Outbreak of Tenacibaculosis (Yellow Mouth) in Atlantic Salmon

(2020) James W. Wynne et al.   Frontiers in Microbiology

Comparison of bacterial diversity and distribution on the gills of Atlantic salmon ( Salmo salar L.): an evaluation of sampling techniques

(2020) J. Slinger et al.   JOURNAL OF APPLIED MICROBIOLOGY

Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2

(2019) Evan Bolyen et al.   NATURE BIOTECHNOLOGY

Changes in distribution, morphology and ultrastructure of chloride cell in Atlantic salmon during an AGD infection

(2019) Yao‐Chung Chang et al.   JOURNAL OF FISH DISEASES

Atlantic salmon (Salmo salar) mounts systemic and mucosal stress responses to peracetic acid

(2019) Malene Soleng et al.   FISH & SHELLFISH IMMUNOLOGY

The interaction between temperature and dose on the efficacy and biochemical response of Atlantic salmon to hydrogen peroxide treatment for amoebic gill disease

(2019) James W. Wynne et al.   JOURNAL OF FISH DISEASES

Effects of disease, antibiotic treatment and recovery trajectory on the microbiome of farmed seabass (Dicentrarchus labrax)

(2019) Daniela Rosado et al.   Scientific Reports

The Inner Workings of the Outer Surface: Skin and Gill Microbiota as Indicators of Changing Gut Health in Yellowtail Kingfish

(2018) Thibault P. R. A. Legrand et al.   Frontiers in Microbiology

Optimizing taxonomic classification of marker-gene amplicon sequences with QIIME 2’s q2-feature-classifier plugin

(2018) Nicholas A. Bokulich et al.   Microbiome

Simple statistical identification and removal of contaminant sequences in marker-gene and metagenomics data

(2018) Nicole M. Davis et al.   Microbiome

The environmental and host-associated bacterial microbiota of Arctic seawater-farmed Atlantic salmon with ulcerative disorders

(2017) C Karlsen et al.   JOURNAL OF FISH DISEASES

The Skin-Mucus Microbial Community of Farmed Atlantic Salmon (Salmo salar)

(2017) Giusi Minniti et al.   Frontiers in Microbiology

Under Pressure: Interactions between Commensal Microbiota and the Teleost Immune System

(2017) Cecelia Kelly et al.   Frontiers in Immunology

Microbiome disruption and recovery in the fish Gambusia affinis following exposure to broad-spectrum antibiotic

(2017) Jeanette Carlson et al.   Infection and Drug Resistance

Salmonid alphavirus infection causes skin dysbiosis in Atlantic salmon (Salmo salar L.) post-smolts

(2017) Kristin M. Reid et al.   PLoS One

Parasitism perturbs the mucosal microbiome of Atlantic Salmon

(2017) M. S. Llewellyn et al.   Scientific Reports

Influence of Fishmeal-Free Diets on Microbial Communities in Atlantic Salmon (Salmo salar) Recirculation Aquaculture Systems

(2016) Victor Schmidt et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Hydrogen peroxide treatment in Atlantic salmon induces stress and detoxification response in a daily manner

(2016) L. M. Vera et al.   CHRONOBIOLOGY INTERNATIONAL

Morphological diversity ofParamoeba peruranstrophozoites and their interaction with Atlantic salmon,Salmo salarL., gills

(2016) J Wiik-Nielsen et al.   JOURNAL OF FISH DISEASES

DADA2: High-resolution sample inference from Illumina amplicon data

(2016) Benjamin J Callahan et al.   NATURE METHODS

Functional Redundancy-Induced Stability of Gut Microbiota Subjected to Disturbance

(2016) Andrés Moya et al.   TRENDS IN MICROBIOLOGY

Branchial nitrogen cycle symbionts can remove ammonia in fish gills

(2016) Maartje A.H.J. van Kessel et al.   Environmental Microbiology Reports

Transition from freshwater to seawater reshapes the skin-associated microbiota of Atlantic salmon

(2016) Jep Lokesh et al.   Scientific Reports

Microbial Dysbiosis: Rethinking Disease in Marine Ecosystems

(2016) Suhelen Egan et al.   Frontiers in Microbiology

Alterations of the gut microbiome of largemouth bronze gudgeon (Coreius guichenoti) suffering from furunculosis

(2016) Tongtong Li et al.   Scientific Reports

Freshwater treatment of amoebic gill disease and sea-lice in seawater salmon production: Considerations of water chemistry and fish welfare in Norway

(2015) Mark D. Powell et al.   AQUACULTURE

Depth distribution of the amoebic gill disease agent, Neoparamoeba perurans, in salmon sea-cages

(2015) DW Wright et al.   Aquaculture Environment Interactions

A longitudinal study of amoebic gill disease on a marine Atlantic salmon farm utilising a real-time PCR assay for the detection of Neoparamoeba perurans

(2015) JK Downes et al.   Aquaculture Environment Interactions

Evidence of immune and inflammatory processes in the gills of AGD-affected Atlantic salmon, Salmo salar L.

(2014) Y. Pennacchi et al.   FISH & SHELLFISH IMMUNOLOGY

The mucosal immune system of fish: The evolution of tolerating commensals while fighting pathogens

(2013) Daniela Gomez et al.   FISH & SHELLFISH IMMUNOLOGY

phyloseq: An R Package for Reproducible Interactive Analysis and Graphics of Microbiome Census Data

(2013) Paul J. McMurdie et al.   PLoS One

In vitro cultured Neoparamoeba perurans causes amoebic gill disease in Atlantic salmon and fulfils Koch’s postulates

(2012) P.B.B. Crosbie et al.   INTERNATIONAL JOURNAL FOR PARASITOLOGY

Preliminary success using hydrogen peroxide to treat Atlantic salmon, Salmo salar L., affected with experimentally induced amoebic gill disease (AGD)

(2012) M B Adams et al.   JOURNAL OF FISH DISEASES

The SILVA ribosomal RNA gene database project: improved data processing and web-based tools

(2012) Christian Quast et al.   NUCLEIC ACIDS RESEARCH

Compartmentalized Control of Skin Immunity by Resident Commensals

(2012) S. Naik et al.   SCIENCE

Parasitism by protozoan Ichthyophthirius multifiliis enhanced invasion of Aeromonas hydrophila in tissues of channel catfish

(2011) De-Hai Xu et al.   VETERINARY PARASITOLOGY

Rapid detection and quantification of Neoparamoeba perurans in the marine environment

(2010) A.R. Bridle et al.   AQUACULTURE

Branchial mechanical injury does not accelerate the progression of experimentally induced amoebic gill disease (AGD) in Atlantic salmon Salmo salar L.

(2009) M.B. Adams et al.   AQUACULTURE

Gill observations in Atlantic salmon (Salmo salar, L.) during repeated amoebic gill disease (AGD) field exposure and survival challenge

(2009) Richard S. Taylor et al.   AQUACULTURE

A review on the interactions between gut microbiota and innate immunity of fish: Table 1

(2008) Geovanny D. Gómez et al.   FEMS IMMUNOLOGY AND MEDICAL MICROBIOLOGY

Oxytetracycline Treatment Reduces Bacterial Diversity of Intestinal Microbiota of Atlantic Salmon

(2008) Paola Navarrete et al.   JOURNAL OF AQUATIC ANIMAL HEALTH

Neoparamoebic gill infections: host response and physiology in salmonids

(2008) M. D. Powell et al.   JOURNAL OF FISH BIOLOGY

The Interplay between Entamoeba and Enteropathogenic Bacteria Modulates Epithelial Cell Damage

(2008) José Manuel Galván-Moroyoqui et al.   PLoS Neglected Tropical Diseases

Efficacy of Chloramine-T to Control Mortality in Freshwater-Reared Salmonids Diagnosed with Bacterial Gill Disease

(2007) James D. Bowker et al.   NORTH AMERICAN JOURNAL OF AQUACULTURE