The environmental and host-associated bacterial microbiota of Arctic seawater-farmed Atlantic salmon with ulcerative disorders

Microbiota of wild-caught Red Snapper Lutjanus campechanus

(2016) Andrea M. Tarnecki et al.   BMC MICROBIOLOGY

Coupled RNA-SIP and metatranscriptomics of active chemolithoautotrophic communities at a deep-sea hydrothermal vent

(2016) Caroline S Fortunato et al.   ISME Journal

A high-resolution map of the gut microbiota in Atlantic salmon (Salmo salar): A basis for comparative gut microbial research

(2016) Karina Gajardo et al.   Scientific Reports

Effect of dietary components on the gut microbiota of aquatic animals. A never-ending story?

(2015) E. Ringø et al.   AQUACULTURE NUTRITION

The biogeography of the atlantic salmon (Salmo salar) gut microbiome

(2015) Martin S Llewellyn et al.   ISME Journal

Connecting biodiversity and potential functional role in modern euxinic environments by microbial metagenomics

(2015) Tomàs Llorens-Marès et al.   ISME Journal

Community Structure of Skin Microbiome of Gulf Killifish, Fundulus grandis, Is Driven by Seasonality and Not Exposure to Oiled Sediments in a Louisiana Salt Marsh

(2015) Andrea M. Larsen et al.   MICROBIAL ECOLOGY

Community assembly of a euryhaline fish microbiome during salinity acclimation

(2015) Victor T. Schmidt et al.   MOLECULAR ECOLOGY

Multilocus Sequence Analysis of the Marine Bacterial Genus Tenacibaculum Suggests Parallel Evolution of Fish Pathogenicity and Endemic Colonization of Aquaculture Systems

(2014) Christophe Habib et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Nutritional impacts on gene expression in the surface mucosa of blue catfish (Ictalurus furcatus)

(2014) Chao Li et al.   DEVELOPMENTAL AND COMPARATIVE IMMUNOLOGY

Niches of two polysaccharide-degrading Polaribacter isolates from the North Sea during a spring diatom bloom

(2014) Peng Xing et al.   ISME Journal

Pyrosequencing-based characterization of gastrointestinal bacteria of Atlantic salmon (Salmo salarL.) within a commercial mariculture system

(2014) K.Z. Zarkasi et al.   JOURNAL OF APPLIED MICROBIOLOGY

Diversity of Bacteria Cultured from the Blood of Lesser Electric Rays Caught in the Northern Gulf of Mexico

(2014) Zhen Tao et al.   JOURNAL OF AQUATIC ANIMAL HEALTH

Population Dynamics of Vibrio and Pseudomonas Species Isolated from Farmed Tasmanian Atlantic Salmon (Salmo salar L.): A Seasonal Study

(2014) Eva Hatje et al.   MICROBIAL ECOLOGY

Master recyclers: features and functions of bacteria associated with phytoplankton blooms

(2014) Alison Buchan et al.   NATURE REVIEWS MICROBIOLOGY

Snow Surface Microbiome on the High Antarctic Plateau (DOME C)

(2014) Luigi Michaud et al.   PLoS One

Co-infection of Atlantic salmon (Salmo salar), by Moritella viscosa and Aliivibrio wodanis, development of disease and host colonization

(2014) Christian Karlsen et al.   VETERINARY MICROBIOLOGY

Phaeocystis antarctica blooms strongly influence bacterial community structures in the Amundsen Sea polynya

(2014) Tom O. Delmont et al.   Frontiers in Microbiology

The Genome of the Alga-Associated Marine Flavobacterium Formosa agariphila KMM 3901TReveals a Broad Potential for Degradation of Algal Polysaccharides

(2013) Alexander J. Mann et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Taxonomic and functional metagenomic profiling of gastrointestinal tract microbiome of the farmed adult turbot (Scophthalmus maximus)

(2013) Mengxin Xing et al.   FEMS MICROBIOLOGY ECOLOGY

Microbial community dynamics and effect of environmental microbial reservoirs on red-backed salamanders (Plethodon cinereus)

(2013) Andrew H Loudon et al.   ISME Journal

Predominant Bacteria Associated with Red Snapper from the Northern Gulf of Mexico

(2013) Covadonga R. Arias et al.   JOURNAL OF AQUATIC ANIMAL HEALTH

Change in food ingestion induces rapid shifts in the diversity of microbiota associated with cutaneous mucus of Atlantic salmonSalmo salar

(2013) A. Landeira-Dabarca et al.   JOURNAL OF FISH BIOLOGY

Bacteria Contribute to Sediment Nutrient Release and Reflect Progressed Eutrophication-Driven Hypoxia in an Organic-Rich Continental Sea

(2013) Hanna Sinkko et al.   PLoS One

Short-Term Feed Deprivation Alters Immune Status of Surface Mucosa in Channel Catfish (Ictalurus punctatus)

(2013) Lisa Liu et al.   PLoS One

New rRNA Gene-Based Phylogenies of the Alphaproteobacteria Provide Perspective on Major Groups, Mitochondrial Ancestry and Phylogenetic Instability

(2013) Matteo P. Ferla et al.   PLoS One

Dietary soybean protein concentrate-induced intestinal disorder in marine farmed Atlantic salmon, Salmo salar is associated with alterations in gut microbiota

(2013) Timothy J. Green et al.   VETERINARY MICROBIOLOGY

Prevalence and Population Structure of Vibrio vulnificus on Fishes from the Northern Gulf of Mexico

(2012) Zhen Tao et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Comparison of the Levels of Bacterial Diversity in Freshwater, Intertidal Wetland, and Marine Sediments by Using Millions of Illumina Tags

(2012) Yu Wang et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Ocean currents shape the microbiome of Arctic marine sediments

(2012) Leila J Hamdan et al.   ISME Journal

Comparison of Sulphate-reducing Bacterial Communities in Japanese Fish Farm Sediments with Different Levels of Organic Enrichment

(2012) Ryuji Kondo et al.   MICROBES AND ENVIRONMENTS

Environmental and ecological factors that shape the gut bacterial communities of fish: a meta-analysis

(2012) KAREN E. SULLAM et al.   MOLECULAR ECOLOGY

Diversity, stability and resilience of the human gut microbiota

(2012) Catherine A. Lozupone et al.   NATURE

Substrate-Controlled Succession of Marine Bacterioplankton Populations Induced by a Phytoplankton Bloom

(2012) H. Teeling et al.   SCIENCE

Differences in bacterial community composition in Baltic Sea sediment in response to fish farming

(2011) Manu Tamminen et al.   AQUACULTURE

UCHIME improves sensitivity and speed of chimera detection

(2011) Robert C. Edgar et al.   BIOINFORMATICS

FLASH: fast length adjustment of short reads to improve genome assemblies

(2011) T. Magoc et al.   BIOINFORMATICS

Taxonomy, Epidemiology, and Clinical Relevance of the Genus Arcobacter

(2011) L. Collado et al.   CLINICAL MICROBIOLOGY REVIEWS

Evidence for a core gut microbiota in the zebrafish

(2011) Guus Roeselers et al.   ISME Journal

Virulence properties of Moritella viscosa extracellular products

(2011) B Bjornsdottir et al.   JOURNAL OF FISH DISEASES

Vibrio salmonicida pathogenesis analyzed by experimental challenge of Atlantic salmon (Salmo salar)

(2011) Ane Mohn Bjelland et al.   MICROBIAL PATHOGENESIS

MEGA5: Molecular Evolutionary Genetics Analysis Using Maximum Likelihood, Evolutionary Distance, and Maximum Parsimony Methods

(2011) K. Tamura et al.   MOLECULAR BIOLOGY AND EVOLUTION

Moritella viscosa bypasses Atlantic salmon epidermal keratocyte clearing activity and might use skin surfaces as a port of infection

(2011) Christian Karlsen et al.   VETERINARY MICROBIOLOGY

The current status and future focus of probiotic and prebiotic applications for salmonids

(2010) Daniel L. Merrifield et al.   AQUACULTURE

Role of gastrointestinal microbiota in fish

(2010) Sukanta K Nayak   AQUACULTURE RESEARCH

Search and clustering orders of magnitude faster than BLAST

(2010) Robert C. Edgar   BIOINFORMATICS

Tenacibaculum sp. associated with winter ulcers in sea-reared Atlantic salmon Salmo salar

(2010) AB Olsen et al.   DISEASES OF AQUATIC ORGANISMS

Distinct flavobacterial communities in contrasting water masses of the North Atlantic Ocean

(2010) Paola R Gómez-Pereira et al.   ISME Journal

QIIME allows analysis of high-throughput community sequencing data

(2010) J Gregory Caporaso et al.   NATURE METHODS

Introducing mothur: Open-Source, Platform-Independent, Community-Supported Software for Describing and Comparing Microbial Communities

(2009) P. D. Schloss et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

The winter ulcer bacterium Moritella viscosa demonstrates adhesion and cytotoxicity in a fish cell model

(2009) Hege Smith Tunsjø et al.   MICROBIAL PATHOGENESIS

Comparison of bacterial communities in fish farm sediments along an organic enrichment gradient

(2008) Naoki Kawahara et al.   AQUACULTURE

Methods for investigating patterns of mortality and quantifying cause-specific mortality in sea-farmed Atlantic salmon Salmo salar

(2008) A Aunsmo et al.   DISEASES OF AQUATIC ORGANISMS

Mass mussel mortality in The Netherlands after a bloom of Phaeocystis globosa (prymnesiophyceae)

(2008) Louis Peperzak et al.   JOURNAL OF SEA RESEARCH