Phenotypically Anchored mRNA and miRNA Expression Profiling in Zebrafish Reveals Flame Retardant Chemical Toxicity Networks

Longer commutes are associated with increased human exposure to tris(1,3-dichloro-2-propyl) phosphate

(2020) Aalekhya Reddam et al.   ENVIRONMENT INTERNATIONAL

The Emerging Roles of miR-125b in Cancers

(2020) Ying Wang et al.   Cancer Management and Research

Effects of novel brominated flame retardants and metabolites on cytotoxicity in human umbilical vein endothelial cells

(2020) Yi Chen et al.   CHEMOSPHERE

The multi-dimensional embryonic zebrafish platform predicts flame retardant bioactivity

(2020) Lisa Truong et al.   REPRODUCTIVE TOXICOLOGY

Characterization of the Fundulus heteroclitus embryo transcriptional response and development of a gene expression-based fingerprint of exposure for the alternative flame retardant, TBPH (bis (2-ethylhexyl)-tetrabromophthalate)

(2019) Weichun Huang et al.   ENVIRONMENTAL POLLUTION

The adverse effect of TCIPP and TCEP on neurodevelopment of zebrafish embryos/larvae

(2019) Ruiwen Li et al.   CHEMOSPHERE

Bioinformatics Resource Manager: a systems biology web tool for microRNA and omics data integration

(2019) Joseph Brown et al.   BMC BIOINFORMATICS

A review of organophosphorus flame retardants (OPFRs): occurrence, bioaccumulation, toxicity, and organism exposure

(2019) Jia Du et al.   ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH

Impaired neurodevelopmental pathways in autism spectrum disorder: a review of signaling mechanisms and crosstalk

(2019) Santosh Kumar et al.   Journal of Neurodevelopmental Disorders

mRNA-Sequencing Identifies Liver as a Potential Target Organ for Triphenyl Phosphate in Embryonic Zebrafish

(2019) Aalekhya Reddam et al.   TOXICOLOGICAL SCIENCES

Using a Multi-Stage hESC Model to Characterize BDE-47 Toxicity During Neurogenesis

(2019) Hao Chen et al.   TOXICOLOGICAL SCIENCES

Graph-based genome alignment and genotyping with HISAT2 and HISAT-genotype

(2019) Daehwan Kim et al.   NATURE BIOTECHNOLOGY

Absence of neurotoxicity and lack of neurobehavioral consequences due to exposure to tetrabromobisphenol A (TBBPA) exposure in humans, animals and zebrafish

(2019) Sam Kacew et al.   ARCHIVES OF TOXICOLOGY

Zebrafish Models of Cancer—New Insights on Modeling Human Cancer in a Non-Mammalian Vertebrate

(2019) Hason et al.   Genes

Organophosphate Ester Flame Retardants: Are They a Regrettable Substitution for Polybrominated Diphenyl Ethers?

(2019) Arlene Blum et al.   Environmental Science & Technology Letters

Early-life exposure to the organophosphorus flame-retardant tris (1,3-dichloro-2-propyl) phosphate induces delayed neurotoxicity associated with DNA methylation in adult zebrafish

(2019) Ruiwen Li et al.   ENVIRONMENT INTERNATIONAL

Bis(2-ethylhexyl)-2,3,4,5-tetrabromophthalate Affects Lipid Metabolism in Zebrafish Larvae via DNA Methylation Modification

(2019) Wei Guo et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

ISG15 in antiviral immunity and beyond

(2018) Yi-Chieh Perng et al.   NATURE REVIEWS MICROBIOLOGY

Comparative analysis of zebrafish and planarian model systems for developmental neurotoxicity screens using an 87-compound library

(2018) Danielle Hagstrom et al.   TOXICOLOGICAL SCIENCES

Disruption of Nuclear Receptor Signaling Alters Triphenyl Phosphate-Induced Cardiotoxicity in Zebrafish Embryos

(2018) Constance A Mitchell et al.   TOXICOLOGICAL SCIENCES

Developmental exposure to low concentrations of organophosphate flame retardants causes life-long behavioral alterations in zebrafish

(2018) Lilah Glazer et al.   TOXICOLOGICAL SCIENCES

Developmental neurotoxicity of triphenyl phosphate in zebrafish larvae

(2018) Qipeng Shi et al.   AQUATIC TOXICOLOGY

Tris(1,3-dichloro-2-propyl) Phosphate Exposure During the Early-Blastula Stage Alters the Normal Trajectory of Zebrafish Embryogenesis

(2018) Subham Dasgupta et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

Signaling Events Downstream of AHR Activation That Contribute to Toxic Responses: The Functional Role of an AHR-Dependent Long Noncoding RNA ( slincR ) Using the Zebrafish Model

(2018) Gloria R. Garcia et al.   ENVIRONMENTAL HEALTH PERSPECTIVES

Toxicity profiling of flame retardants in zebrafish embryos using a battery of assays for developmental toxicity, neurotoxicity, cardiotoxicity and hepatotoxicity toward human relevance

(2018) Ainhoa Alzualde et al.   NEUROTOXICOLOGY AND TERATOLOGY

Prenatal exposure to organophosphate esters and cognitive development in young children in the Pregnancy, Infection, and Nutrition Study

(2018) Brett T. Doherty et al.   ENVIRONMENTAL RESEARCH

Effects of novel brominated flame retardant TBPH and its metabolite TBMEHP on human vascular endothelial cells: Implication for human health risks

(2017) Ping Xiang et al.   ENVIRONMENTAL RESEARCH

Brominated and organophosphate flame retardants target different neurodevelopmental stages, characterized with embryonic neural stem cells and neuronotypic PC12 cells

(2017) Theodore A. Slotkin et al.   TOXICOLOGY

Triphenyl phosphate enhances adipogenic differentiation, glucose uptake and lipolysis via endocrine and noradrenergic mechanisms

(2017) German Cano-Sancho et al.   TOXICOLOGY IN VITRO

Comparative Toxicogenomic Responses to the Flame Retardant mITP in Developing Zebrafish

(2016) Derik E. Haggard et al.   CHEMICAL RESEARCH IN TOXICOLOGY

TBBPA exposure during a sensitive developmental window produces neurobehavioral changes in larval zebrafish

(2016) Jiangfei Chen et al.   ENVIRONMENTAL POLLUTION

Embryonic atrazine exposure alters zebrafish and human miRNAs associated with angiogenesis, cancer, and neurodevelopment

(2016) Sara E. Wirbisky et al.   FOOD AND CHEMICAL TOXICOLOGY

Organophosphate ester flame retardants and plasticizers in human placenta in Eastern China

(2016) Jinjian Ding et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Triclosan Exposure Is Associated with Rapid Restructuring of the Microbiome in Adult Zebrafish

(2016) Christopher A. Gaulke et al.   PLoS One

TPhP exposure disturbs carbohydrate metabolism, lipid metabolism, and the DNA damage repair system in zebrafish liver

(2016) Zhongkun Du et al.   Scientific Reports

Triphenyl phosphate-induced developmental toxicity in zebrafish: Potential role of the retinoic acid receptor

(2015) Gregory M. Isales et al.   AQUATIC TOXICOLOGY

High Exposure to Organophosphate Flame Retardants in Infants: Associations with Baby Products

(2015) Kate Hoffman et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

TBBPA induces developmental toxicity, oxidative stress, and apoptosis in embryos and zebrafish larvae (Danio rerio)

(2015) Shengmin Wu et al.   ENVIRONMENTAL TOXICOLOGY

Interleukin 1�-Responsive MicroRNA-146a Is Critical for the Cytokine-Induced Tolerance and Cross-Tolerance to Toll-Like Receptor Ligands

(2015) Md A. Nahid et al.   Journal of Innate Immunity

HISAT: a fast spliced aligner with low memory requirements

(2015) Daehwan Kim et al.   NATURE METHODS

Use of alternative assays to identify and prioritize organophosphorus flame retardants for potential developmental and neurotoxicity

(2015) Mamta Behl et al.   NEUROTOXICOLOGY AND TERATOLOGY

TFmiR: a web server for constructing and analyzing disease-specific transcription factor and miRNA co-regulatory networks

(2015) Mohamed Hamed et al.   NUCLEIC ACIDS RESEARCH

Advanced Morphological — Behavioral Test Platform Reveals Neurodevelopmental Defects in Embryonic Zebrafish Exposed to Comprehensive Suite of Halogenated and Organophosphate Flame Retardants

(2015) Pamela D. Noyes et al.   TOXICOLOGICAL SCIENCES

HTSeq--a Python framework to work with high-throughput sequencing data

(2014) S. Anders et al.   BIOINFORMATICS

Skewer: a fast and accurate adapter trimmer for next-generation sequencing paired-end reads

(2014) Hongshan Jiang et al.   BMC BIOINFORMATICS

Good guy or bad guy: the opposing roles of microRNA 125b in cancer

(2014) Julia Banzhaf-Strathmann et al.   Cell Communication and Signaling

Prenatal Polybrominated Diphenyl Ether Exposures and Neurodevelopment in U.S. Children through 5 Years of Age: The HOME Study

(2014) Aimin Chen et al.   ENVIRONMENTAL HEALTH PERSPECTIVES

MicroRNAs Involved in the Lipid Metabolism and Their Possible Implications for Atherosclerosis Development and Treatment

(2014) Jan Novák et al.   MEDIATORS OF INFLAMMATION

Mapping the Human miRNA Interactome by CLASH Reveals Frequent Noncanonical Binding

(2013) Aleksandra Helwak et al.   CELL

Identification of Tetrabromobisphenol A Allyl Ether and Tetrabromobisphenol A 2,3-Dibromopropyl Ether in the Ambient Environment near a Manufacturing Site and in Mollusks at a Coastal Region

(2013) Guangbo Qu et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions

(2013) Daehwan Kim et al.   GENOME BIOLOGY

miR-125 potentiates early neural specification of human embryonic stem cells

(2012) C. Boissart et al.   DEVELOPMENT

Retinoic acid signalling during development

(2012) M. Rhinn et al.   DEVELOPMENT

Early Zebrafish Embryogenesis Is Susceptible to Developmental TDCPP Exposure

(2012) Sean P. McGee et al.   ENVIRONMENTAL HEALTH PERSPECTIVES

Novel and High Volume Use Flame Retardants in US Couches Reflective of the 2005 PentaBDE Phase Out

(2012) Heather M. Stapleton et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

Fast gapped-read alignment with Bowtie 2

(2012) Ben Langmead et al.   NATURE METHODS

Effects of short-term exposure to 2,3,7,8-tetrachlorodibenzo-p-dioxin on microRNA expression in zebrafish embryos

(2012) Matthew J. Jenny et al.   TOXICOLOGY AND APPLIED PHARMACOLOGY

The retinoid X receptors and their ligands

(2011) Marcia I. Dawson et al.   BIOCHIMICA ET BIOPHYSICA ACTA-MOLECULAR AND CELL BIOLOGY OF LIPIDS

Perinatal Exposure to Brominated Flame Retardants and Polychlorinated Biphenyls in Japan

(2009) Yukiko KAWASHIRO et al.   ENDOCRINE JOURNAL

Detection of Organophosphate Flame Retardants in Furniture Foam and U.S. House Dust

(2009) Heather M. Stapleton et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

MicroRNA regulates human vitamin D receptor

(2009) Takuya Mohri et al.   INTERNATIONAL JOURNAL OF CANCER

Alterations in microRNA expression in stress-induced cellular senescence

(2009) Guorong Li et al.   MECHANISMS OF AGEING AND DEVELOPMENT

Neurobehavioral effects of tetrabromobisphenol A, a brominated flame retardant, in mice

(2009) Akira Nakajima et al.   TOXICOLOGY LETTERS

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

(2009) Ben Langmead et al.   GENOME BIOLOGY

Analysis of gene expression in a developmental context emphasizes distinct biological leitmotifs in human cancers

(2008) Kamila Naxerova et al.   GENOME BIOLOGY